collaborativebioinformatics
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Disease_subsetting
Disease_subsetting PublicColorectal cancer CMs subtyping and personalized medication recommendation based on RNA seq pathway analysis
Repositories
- BioGraphRAG Public
Implement a system to use GNN and/or LLM to use knowledge graphs to integrate literature with knowledge graphs made from large public datasets (CIVIC, TCGA, CPTAC)
collaborativebioinformatics/BioGraphRAG’s past year of commit activity - ClassiGraph Public
Develop a graph neural network to integrate proteomic and genomic features for cancer subtype classification (e.g. CPTAC-2 and CPTAC-3 breast, colorectal, and ovarian cancer data)
collaborativebioinformatics/ClassiGraph’s past year of commit activity - CNVision Public
collaborativebioinformatics/CNVision’s past year of commit activity - Model_Garbage_Collection Public
Implement a system to prune erroneous model assertions in knowledge graphs derived from GNN and/or LLM models or agents.
collaborativebioinformatics/Model_Garbage_Collection’s past year of commit activity - MethSmoothEval Public
collaborativebioinformatics/MethSmoothEval’s past year of commit activity - MIDAS Public
Implement a system to combine existing knowledge graphs (e.g. DisGeNet) with primary datasets (e.g. TCGA, 1000 genomes)
collaborativebioinformatics/MIDAS’s past year of commit activity - ECoGraph Public
Build a knowledge graph integrating cancer genomics data to identify potential biomarkers and therapeutic targets (e.g. TCGA)
collaborativebioinformatics/ECoGraph’s past year of commit activity - Human_Haploblock_Lengths Public
collaborativebioinformatics/Human_Haploblock_Lengths’s past year of commit activity
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