Gene Clustering

Usage

Install Python 3.9.9. Install numpy, pandas, matplotlib, scipy, sklearn, and gap-stat
Preprocess the data by running python3 preprocess.py yeast.tsv data.pkl
Cluster using k-means by running python3 kmeans.py data.pkl clusters.pkl
a. Change k in kmeans.py
Cluster using Gaussian mixture model by running python3 gmm.py data.pkl clusters.pkl
a. Change k in gmm.py
Plot within sum of squares by running python3 plot_wss.py
a. Change wss values in plot_wss.py
Plot gap statistic by running python3 python3 gap.py
Plot clusters by running python3 plot_clusters.py
a. Change the filenames of the clusters in plot_clusters.py

Name		Name	Last commit message	Last commit date
Latest commit History 15 Commits
README.md		README.md
__init__.py		__init__.py
gap.py		gap.py
gmm.py		gmm.py
kmeans.py		kmeans.py
plot_clusters.py		plot_clusters.py
plot_wss.py		plot_wss.py
preprocess.py		preprocess.py
yeast.tsv		yeast.tsv