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Added non_null_fields #147

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d2798fd
Added non_null_fields
lhannest Feb 27, 2018
e0404c1
Not assigning attributes to self, so as to not clash with base classe…
lhannest Feb 27, 2018
14739e1
Merge branch 'master' into issue-143
lhannest Feb 27, 2018
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41 changes: 21 additions & 20 deletions ontobio/golr/beacon_query.py
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Original file line number Diff line number Diff line change
Expand Up @@ -29,37 +29,38 @@ def __init__(
keywords=None,
categories=None,
relations=None,
rows=10,
start=None
select_fields=None,
non_null_fields=[],
**kwargs
):
if select_fields == None:
select_fields = _get_select_fields()

if non_null_fields == []:
non_null_fields = ['relation', 'subject', 'object', 'id']

super().__init__(
select_fields=_get_select_fields(),
rows=rows,
start=start
select_fields=select_fields,
non_null_fields=non_null_fields,
**kwargs
)

self.sources = sources
self.targets = targets
self.keywords = keywords
self.categories = categories
self.relations = relations

filters = {}

if self.targets != None and self.targets != []:
filters['closure'] = _make_disjunction(self.targets, '"')
if targets != None and targets != []:
filters['closure'] = _make_disjunction(targets, '"')

if self.keywords != None and self.keywords != []:
filters['label'] = _make_disjunction(self.keywords, '*')
if keywords != None and keywords != []:
filters['label'] = _make_disjunction(keywords, '*')

if self.categories != None and self.categories != []:
filters['category'] = _make_disjunction(self.categories, '*')
if categories != None and categories != []:
filters['category'] = _make_disjunction(categories, '*')

source_disjunction=_make_disjunction(self.sources, '"')
source_disjunction=_make_disjunction(sources, '"')
self.q=_build_query(source_disjunction, filters)

if self.relations != None and relations != []:
relation_disjunction = _make_disjunction(self.relations, '"')
if relations != None and relations != []:
relation_disjunction = _make_disjunction(relations, '"')
self.q += ' AND (relation_label: ' + relation_disjunction + ')'

def _build_query(sources, filters):
Expand Down