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biocore

Collaboratively developed bioinformatics software.

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Cyberspace
http://biocore.github.io/

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gneiss gneiss Public

compositional data analysis toolbox

Jupyter Notebook 59 27

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Showing 10 of 91 repositories

pysyndna Public
Python implementation and extension of SynDNA ("a Synthetic DNA Spike-in Method for Absolute Quantification of Shotgun Metagenomic Sequencing", Zaramela et al., mSystems 2022

biocore/pysyndna’s past year of commit activity

Python 0 0 0 0 Updated Aug 19, 2025
q2-conduit Public
Plugin that converts Conduit metaproteomics results into QIIME 2 artifacts usable in downstream analyses

biocore/q2-conduit’s past year of commit activity

Python 0 BSD-3-Clause 0 0 0 Updated Aug 18, 2025
unifrac-binaries Public

biocore/unifrac-binaries’s past year of commit activity

C++ 2 BSD-3-Clause 9 3 0 Updated Aug 15, 2025
wol Public
Reference Phylogeny for Bacterial and Archaeal Genomes

biocore/wol’s past year of commit activity

Jupyter Notebook 25 BSD-3-Clause 18 0 0 Updated Aug 9, 2025
kl-metapool Public
Jupyter notebooks to assist with sample processing

biocore/kl-metapool’s past year of commit activity

Python 9 MIT 19 53 (2 issues need help) 2 Updated Aug 5, 2025
micov Public
Aggregate genome coverage

biocore/micov’s past year of commit activity

Python 4 5 8 0 Updated Jul 27, 2025
microsetta-processing Public
Processing scripts for The Microsetta Initiative

biocore/microsetta-processing’s past year of commit activity

Python 1 BSD-3-Clause 1 1 1 Updated Jul 11, 2025
biom-format Public
The Biological Observation Matrix (BIOM) Format Project

biocore/biom-format’s past year of commit activity

Python 95 94 23 4 Updated Jul 10, 2025
emperor Public
Emperor a tool for the analysis and visualization of large microbial ecology datasets

biocore/emperor’s past year of commit activity

JavaScript 55 47 61 3 Updated Jul 1, 2025
microsetta-interface Public
The Microsetta participant facing user interface

biocore/microsetta-interface’s past year of commit activity

Jinja 1 BSD-3-Clause 17 44 5 Updated Jun 30, 2025

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