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ARTICnetwork

This is the ARTICnetwork project, a Wellcome Trust funded project to provide a system for real-time genomic epidemiology of virus outbreaks.

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  1. artic-ncov2019 artic-ncov2019 Public

    ARTIC nanopore protocol for nCoV2019 novel coronavirus

    Python 170 164

  2. fieldbioinformatics fieldbioinformatics Public

    Forked from zibraproject/zika-pipeline

    The ARTIC field bioinformatics pipeline

    Python 122 68

  3. rampart rampart Public

    Read Assignment, Mapping, and Phylogenetic Analysis in Real Time

    JavaScript 80 33

  4. civet civet Public

    Cluster Investigation & Virus Epidemiology Tool

    Python 50 14

  5. primer-schemes primer-schemes Public

    Primer schemes for real-time genome epidemiology

    Python 27 42

  6. primalscheme3 primalscheme3 Public

    Primalscheme3. Generation of highly multiplex primerschemes

    HTML 14 4

Repositories

Showing 10 of 38 repositories
  • fieldbioinformatics Public Forked from zibraproject/zika-pipeline

    The ARTIC field bioinformatics pipeline

    artic-network/fieldbioinformatics’s past year of commit activity
    Python 122 MIT 87 5 0 Updated May 8, 2025
  • scylla Public

    single sample processing

    artic-network/scylla’s past year of commit activity
    Python 4 GPL-3.0 4 5 0 Updated May 8, 2025
  • artic-doc Public
    artic-network/artic-doc’s past year of commit activity
    HTML 0 0 0 0 Updated May 7, 2025
  • primalscheme3 Public

    Primalscheme3. Generation of highly multiplex primerschemes

    artic-network/primalscheme3’s past year of commit activity
    HTML 14 GPL-3.0 4 1 0 Updated May 7, 2025
  • squirrel-nf Public

    Interactive workflow to run squirrel

    artic-network/squirrel-nf’s past year of commit activity
    Nextflow 0 GPL-3.0 1 0 0 Updated Apr 22, 2025
  • artic-mpxv-illumina-nf Public Forked from BCCDC-PHL/mpxv-artic-nf
    artic-network/artic-mpxv-illumina-nf’s past year of commit activity
    Python 2 MIT 4 0 0 Updated Apr 16, 2025
  • rampart Public

    Read Assignment, Mapping, and Phylogenetic Analysis in Real Time

    artic-network/rampart’s past year of commit activity
    JavaScript 80 GPL-3.0 33 28 17 Updated Mar 11, 2025
  • rampart-nf Public

    Nextflow wrapper for RAMPART

    artic-network/rampart-nf’s past year of commit activity
    Nextflow 0 Apache-2.0 0 0 0 Updated Mar 11, 2025
  • phylofunk Public
    artic-network/phylofunk’s past year of commit activity
    Java 1 GPL-3.0 0 0 0 Updated Mar 8, 2025
  • aubergine Public
    artic-network/aubergine’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Mar 7, 2025
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