Generative Cartography of Single-Cell Epigenomes
A Python framework for single-cell epigenomic analysis
Epione is a Python framework for single-cell epigenomic analysis and generative modeling. Named after the Greek goddess of healing, Epione aims to provide tools for understanding epigenomic landscapes in single cells.
⚠️ Version 0.0.1: This is an early development version. Core features are still being implemented.
From source:
git clone https://github.com/aristoteleo/epione.git
cd epione
pip install -e .📋 PyPI release coming in future versions
import epione as epi
# Basic functionality coming soon
# Check documentation for current capabilities- Python 3.9+
- Core dependencies:
numpy,pandas,scipyanndata- Additional dependencies will be defined as features are implemented
Documentation is being developed and will be available at the project website. Current documentation drafts are in the epione_guide/ directory.
Version 0.0.1 includes:
- Project structure and basic setup
- Initial documentation framework
- Core package skeleton
Coming in future versions:
- Single-cell data processing utilities
- Generative modeling tools
- Visualization functions
- Comprehensive tutorials and examples
This project is in early development. We welcome:
- Feature suggestions and feedback
- Bug reports and issues
- Documentation improvements
- Code contributions
This project is GPL 3.0 licensed.
Built for the single-cell epigenomics community