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docs: Add embedding documentation for Alignoth outputs #3

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docs: Add embedding documentation for Alignoth outputs

docs: Add embedding documentation for Alignoth outputs #3

Workflow file for this run

.github/workflows/test.yml at 131131e
name: test
on:
pull_request:
jobs:
test:
runs-on: ubuntu-latest
defaults:
run:
shell: bash -el {0}
steps:
- uses: actions/checkout@v4
- name: Install stable toolchain
uses: actions-rs/toolchain@v1
with:
toolchain: stable
- name: Install alignoth
run: cargo install alignoth
- name: Checkout alignoth repo
uses: actions/checkout@v4
with:
repository: alignoth/alignoth
path: alignoth
- name: Build preview html
run: alignoth -b alignoth/tests/sample_3/NA12878.bam -r alignoth/tests/sample_3/ref.fa -g 1:250-500 --html --max-read-depth 40 > src/preview.html
- name: locosopa
uses: koesterlab/locosopa@main
with:
config: src/config.yaml
path: build
deploy: "false"