Processing Pipeline

Matlab Requirements

• MATLAB >= 9.6 (R2019a)
• Signal Processing Toolbox
• DSP System Toolbox
• Parallel Computing Toolbox
• MATLAB Parallel Server
• Polyspace Bug Finder
• NPMK for Blackrock recordings.
• Neuroshare for Ripple recordings.

Python Requirements

pip install -r requirements.txt

Steps

1. Parse recording using parse_ripple.m (Ripple recording) or parse_NSx.m (Blacrock recording)
2. Use new_check_lfp_power_NSX.m to create figures to analize the power spectrum and calculate notches
3. Open processing_pipeline.ipynb and follow the cells there.

The processing pipeline includes comments for new Python users and details about how to use the spikeinterface library.