Phyloroot

Phyloroot is a python module with tools for orienting undirected phylogenetic networks as oriented networks in several well-known classes.

Install

Install as pypi package phyloroot:

pip install phyloroot

Usage

You can load the package methods with import phyloroot in python, or use the command line interface. For example, to get all orchard orientations of the example network in ./examples/Example1-Components.txt, execute the following command:

phyloroot -f ./examples/Example1-Components.txt -c O

For more information, use the help function:

phyloroot -h