SE Release 24/6/2015

Release for the Software Engeneering side of the project. 24/6/2015.

Final Build for Context side

BinaryBuild8.1

Update pom.

Binary Build on June 19 (SIG)

Final release before feature lock.

Binary Build June 15

Added features:

• Highlight and selected node is consistent after switching zoomlevels.
• Works on 38 strains graph, but is slow.
• Mini map showing where the user is relative to the whole graph.
• Collapsed (purple) nodes now have a label showing how many nodes were collapsed.
• Clicking on a collapsed node now has other behaviour than uncollapsed nodes.
• A basic Help dialog has been added (F1) with shortcut keys descriptions.

Sprint7: Merge pull request #42 from maartentbm/mutations

All sprint 7 progress.

Binary Build on June 12.

Issues:

• Doesn't work on the 38 strains data set yet, we are aware of the issue causing an error in the 38 strains data set. Therefore, please use the 10 strains data set for now. Sorry for the inconvenience.
• Width of the whole graph still stays the same.
• After switching between semantic zoomlevels too often, the program will slow down.
• Kill the java process after closing manually through task manager.

New:

• Semantic Zooming: From the moment a graph is loaded, it is possible to zoom in two semantic zooming levels. Scrolling up will eventually load another semantic level (it is needed to scroll a certain amount before the switch will actually occur, please scroll untill a message on the bottom left shows the level has changed), which is based on the pointmutations and indels.
• Together with the initial representation, there are 4 levels possible between which can be navigated. These can be viewed in the bottom left: 0, 1, 2 and 3. Each of these levels have a different threshold for which (currently only point) mutations are collapsed.

Dynamically switch zoom levels

When a graph is loaded, the graph can be collapsed inside the gui.
Some gui elements now only appear after a graph has been loaded.

Issues:
Node placing after collapsing does not work properly.
Collapsing only works on 10 strains so far.

Binary build on June 4.

ContextPL1-0.0.1-SNAPSHOT-jar-with-dependencies.jar is created with maven package. However, no additional features have been completed and integrated yet into the build. Tomorrow we will go over this during the meeting. "Importing graph" loading screen has to be shut down manually to continue.