2025-3.0 envs

.github/workflows/package.yml

@@ -35,7 +35,7 @@ jobs:
     needs: pre-commit
     strategy:
       matrix:
-        python-version: ["3.10", "3.11", "3.12"]
+        python-version: ["3.11", "3.12"]
       fail-fast: false
     env:
       TZ: America/New_York
@@ -113,10 +113,10 @@ jobs:
           sudo rm -f /usr/share/miniconda/.condarc
 
       - name: Setup umamba
-        uses: mamba-org/setup-micromamba@b09ef9b599704322748535812ca03efb2625677b # v2
+        uses: mamba-org/setup-micromamba@7f29b8b80078b1b601dfa018b0f7425c587c63bb # v2.0.6
         with:
           environment-file: envs/env-py${{ env.PYTHONVER }}.yml
-          log-level: info
+          log-level: debug
         env:
           CONDA_OVERRIDE_GLIBC: "2.28"
 
@@ -150,7 +150,7 @@ jobs:
 
       - name: Export of the env .yml file
         run: |
-          conda env export -f ${ARTIFACTS_DIR}/${CONDA_PACK_ENV_NAME}.yml
+          conda env export -f ${ARTIFACTS_DIR}/${CONDA_PACK_ENV_NAME}.yml --format=yaml
           cat ${ARTIFACTS_DIR}/${CONDA_PACK_ENV_NAME}.yml
 
       # https://github.com/actions/upload-artifact
@@ -208,7 +208,7 @@ jobs:
             repo: "tes-profile-collection"
             branch: "main"
             beamline-acronym: "tes"
-        python-version: ["3.10", "3.11", "3.12"]
+        python-version: ["3.11", "3.12"]
       fail-fast: false
     env:
       TZ: America/New_York

configs/config-py310.yml

@@ -1,5 +1,5 @@
 docker_image: "quay.io/condaforge/linux-anvil-cos7-x86_64:latest"
-env_name: "2025-2.2-py310-tiled"
+env_name: "2025-3.0-py310-tiled"
 conda_env_file: "env-py310.yml"
 conda_binary: "mamba"
 python_version: "3.10"
@@ -19,7 +19,7 @@ zenodo_metadata:
     title: "NSLS-II collection conda environment"
     upload_type: "software"
     description: "NSLS-II collection conda environment"
-    version: 2025-2.2-tiled
+    version: 2025-3.0-tiled
     creators:
       - name: Rakitin, Max
         affiliation: "Brookhaven National Laboratory"

configs/config-py311.yml

@@ -1,5 +1,5 @@
 docker_image: "quay.io/condaforge/linux-anvil-cos7-x86_64:latest"
-env_name: "2025-2.2-py311-tiled"
+env_name: "2025-3.0-py311-tiled"
 conda_env_file: "env-py311.yml"
 conda_binary: "mamba"
 python_version: "3.11"
@@ -19,7 +19,7 @@ zenodo_metadata:
     title: "NSLS-II collection conda environment"
     upload_type: "software"
     description: "NSLS-II collection conda environment"
-    version: 2025-2.2-tiled
+    version: 2025-3.0-tiled
     creators:
       - name: Rakitin, Max
         affiliation: "Brookhaven National Laboratory"

configs/config-py312.yml

@@ -1,5 +1,5 @@
 docker_image: "quay.io/condaforge/linux-anvil-cos7-x86_64:latest"
-env_name: "2025-2.2-py312-tiled"
+env_name: "2025-3.0-py312-tiled"
 conda_env_file: "env-py312.yml"
 conda_binary: "mamba"
 python_version: "3.12"
@@ -19,7 +19,7 @@ zenodo_metadata:
     title: "NSLS-II collection conda environment"
     upload_type: "software"
     description: "NSLS-II collection conda environment"
-    version: 2025-2.2-tiled
+    version: 2025-3.0-tiled
     creators:
       - name: Rakitin, Max
         affiliation: "Brookhaven National Laboratory"

envs/env-py310.yml

@@ -1,4 +1,4 @@
-name: 2025-2.2-py310-tiled
+name: 2025-3.0-py310-tiled
 channels:
   - conda-forge
 dependencies:
@@ -18,18 +18,19 @@ dependencies:
   - awkward
   - black
   - blosc-hdf5-plugin
-  - bluesky >=1.14.2
+  - bluesky >=1.14.4
   - bluesky-adaptive >=0.3.1
   - bluesky-kafka >=0.10.0
   - bluesky-live >=0.0.8
   - bluesky-queueserver >=0.0.19
   - bluesky-queueserver-api >=0.0.10
-  - bluesky-tiled-plugins >=2.0.0b64
+  - bluesky-tiled-plugins >=2.0.0b68
   - bluesky-widgets >=0.0.15
   - bokeh
   - boto3
   - bottleneck
   # - broh5
+  - cditools >=0.1.0
   - chxtools
   - cmasher
   - conda-pack
@@ -43,7 +44,7 @@ dependencies:
   - dask-jobqueue
   - dask-ml
   - dask-xgboost
-  - databroker >=2.0.0b64
+  - databroker >=2.0.0b68
   - datview
   - dictdiffer
   - diffpy.pdffit2
@@ -58,6 +59,7 @@ dependencies:
   - eiger-io
   - event-model >=1.21
   - fabio
+  - fastapi >=0.115.8
   - ffmpeg >=4.0
   - flake8
   - fpdf2
@@ -86,8 +88,8 @@ dependencies:
   - ispyb
   - isstools
   - jedi
-  - julia
-  - juliaup
+  # - julia
+  # - juliaup
   - jupyter
   - jupyterlab
   - larixite
@@ -108,14 +110,16 @@ dependencies:
   - nexpy >=1.0.7
   - nodejs
   - nsls2-detector-handlers >=0.0.3
-  - nslsii >=0.11.1
+  - nslsii >=0.11.4
+  - numba-cuda
+  - cuda-version >=12,<13
   - numexpr >=2.8.0,!=2.8.4
   - numpy >=1.20
   - nyxtools >=0.0.12
   - oct2py
   - opencv
   - openmpi >=4.1.4
-  - ophyd >=1.10.5
+  - ophyd >=1.11.0
   # pandas and deps
   - pandas
   - openpyxl  # used by pandas .to_excel()
@@ -130,7 +134,6 @@ dependencies:
   - pillow
   - pocl  # needed by pyopencl, used by the `xrt` package
   - pre-commit
-  - prefect >=2.18,<3
   - py-xgboost
   - py4xs
   - pycentroids
@@ -143,7 +146,6 @@ dependencies:
   - pymatgen >=2024.5.1
   - maggma >=0.66
   - mp-api >=0.41.2
-  - pymca
   - pymcr
   - pymongo >=3.7
   - pyobjcryst
@@ -165,6 +167,7 @@ dependencies:
   - redis-py
   - reportlab
   - requests
+  - rich
   # - sasview  # does not work with pyqt>=5.15
   - scikit-beam >=0.0.24
   - scikit-learn
@@ -184,7 +187,7 @@ dependencies:
   - suitcase-tiff >=0.4.0
   - suitcase-utils
   - sympy
-  - tiled >=0.1.0b29
+  - tiled >=0.1.6
   - toml
   # Latest tomopy v1.15.2 has conflicts with some packages in this environment.
   - tomopy >=1.12.2
@@ -214,7 +217,7 @@ dependencies:
     # - gladier-tools
     - h5json
     - mimesis
-    - ophyd-async[ca,pva] >=0.10.0a2
+    - ophyd-async[ca,pva] >=0.13.1
     - ortools
     - pyhyperscattering[bluesky,ui] >=0.2.9
     - refuse

envs/env-py311.yml

@@ -1,4 +1,4 @@
-name: 2025-2.2-py311-tiled
+name: 2025-3.0-py311-tiled
 channels:
   - conda-forge
 dependencies:
@@ -18,18 +18,19 @@ dependencies:
   - awkward
   - black
   - blosc-hdf5-plugin
-  - bluesky >=1.14.2
+  - bluesky >=1.14.4
   - bluesky-adaptive >=0.3.1
   - bluesky-kafka >=0.10.0
   - bluesky-live >=0.0.8
   - bluesky-queueserver >=0.0.19
   - bluesky-queueserver-api >=0.0.10
-  - bluesky-tiled-plugins >=2.0.0b64
+  - bluesky-tiled-plugins >=2.0.0b68
   - bluesky-widgets >=0.0.15
   - bokeh
   - boto3
   - bottleneck
   # - broh5
+  - cditools >=0.1.0
   - chxtools
   - cmasher
   - conda-pack
@@ -43,7 +44,7 @@ dependencies:
   - dask-jobqueue
   - dask-ml
   - dask-xgboost
-  - databroker >=2.0.0b64
+  - databroker >=2.0.0b68
   - datview
   - dictdiffer
   - diffpy.pdffit2
@@ -58,6 +59,7 @@ dependencies:
   - eiger-io
   - event-model >=1.21
   - fabio
+  - fastapi >=0.115.8
   - ffmpeg >=4.0
   - flake8
   - fpdf2
@@ -86,8 +88,8 @@ dependencies:
   - ispyb
   - isstools
   - jedi
-  - julia
-  - juliaup
+  # - julia
+  # - juliaup
   - jupyter
   - jupyterlab
   - larixite
@@ -108,14 +110,16 @@ dependencies:
   - nexpy >=1.0.7
   - nodejs
   - nsls2-detector-handlers >=0.0.3
-  - nslsii >=0.11.1
+  - nslsii >=0.11.4
+  - numba-cuda
+  - cuda-version >=12,<13
   - numexpr >=2.8.0,!=2.8.4
   - numpy >=1.20
   - nyxtools >=0.0.12
   - oct2py
   - opencv
   - openmpi >=4.1.4
-  - ophyd >=1.10.5
+  - ophyd >=1.11.0
   # pandas and deps
   - pandas
   - openpyxl  # used by pandas .to_excel()
@@ -130,7 +134,6 @@ dependencies:
   - pillow
   - pocl  # needed by pyopencl, used by the `xrt` package
   - pre-commit
-  - prefect >=2.18,<3
   - py-xgboost
   - py4xs
   - pycentroids
@@ -143,7 +146,6 @@ dependencies:
   - pymatgen >=2024.5.1
   - maggma >=0.66
   - mp-api >=0.41.2
-  - pymca
   - pymcr
   - pymongo >=3.7
   - pyobjcryst
@@ -165,6 +167,7 @@ dependencies:
   - redis-py
   - reportlab
   - requests
+  - rich
   # - sasview  # does not work with pyqt>=5.15
   - scikit-beam >=0.0.24
   - scikit-learn
@@ -184,7 +187,7 @@ dependencies:
   - suitcase-tiff >=0.4.0
   - suitcase-utils
   - sympy
-  - tiled >=0.1.0b29
+  - tiled >=0.1.6
   - toml
   # Latest tomopy v1.15.2 has conflicts with some packages in this environment.
   - tomopy >=1.12.2
@@ -214,7 +217,7 @@ dependencies:
     # - gladier-tools
     - h5json
     - mimesis
-    - ophyd-async[ca,pva] >=0.10.0a2
+    - ophyd-async[ca,pva] >=0.13.1
     - ortools
     - pyhyperscattering[bluesky,ui] >=0.2.9
     - refuse