Biomolecular Reaction & Interaction Dynamics Environment (BRIDGE)

BRIDGE is a flavour of the Galaxy platform to run and analyze molecular dynamics simulations.

Get from DockerHub

docker pull scientificomputing/bridge
docker run -d -p 8080:80 scientificomputing/bridge

For more run options see docker-galaxy-stable.

Tagged versions

In case the latest version is not working, also see the tagged versions that are available. For example try 19.05.1 which is pinned to Galaxy 19.05.1

docker pull scientificomputing/bridge:19.05.1
docker run -d -p 8080:80 scientificomputing/bridge:19.05.1

To find tags it is best to browse to the BRIDGE DockerHub page. Alternatively try the following on the commandline to list the first few tags:

curl "https://hub.docker.com/v2/repositories/scientificomputing/bridge/tags?page=1" |jq '."results"[]["name"]'

Quick start with custom Galaxy Docker

• Build: docker build -t bridge .
• Run: docker run -d -p 8080:80 --rm bridge # the --rm flag will automatically remove the container when it exits
• To run with GPU: docker run --gpus all --runtime='nvidia' -v /usr/local/cuda:/usr/local/cuda -d -p 8080:80 bridge
• Use: Open your web browser on http://localhost:8080

Further information

See BRIDGE