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Hdf5 improvements#7

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johltn wants to merge 114 commits intoIfcOpenShell:masterIfcOpenShell/voxelization_toolkit:masterfrom

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Commits

Commits on Mar 5, 2021

• msvc 2019 and win build script fixes

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Commits on Mar 18, 2021

• Create test for HDF libs

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Commits on Apr 12, 2021

• Abstract writer class with Hdf writer subclass

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• Start iteration through continuous chunk

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• Read bits stream and start with HDF5

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Commits on Apr 26, 2021

• Store bit values into HDF file

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Commits on Apr 28, 2021

• Hyperslab writing on fixed dataset dimensions and add test case

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• Write multidimensional dataset for continuous chunks

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Commits on May 1, 2021

• Use extents to write multidimensional HDF

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Commits on May 4, 2021

• Handle constant null storage chunks

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Commits on May 15, 2021

• Better control flow

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• Merge remote-tracking branch 'upstream/master' into HDF5

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Commits on May 16, 2021

• Count all chunks and make planar explicit

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Commits on Jun 1, 2021

• Write bits incrementally

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• Incrementally write dataset regions in Region dataset

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Commits on Jun 2, 2021

• New test case

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  85e9820

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• Install hdf5

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• Add pathes to include and lib dirs

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• Add quotes

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• Add subdir for include path

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• Move HDF installation variables

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• Libraries variable

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• Update Travis file

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• Update Travis file

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• serial

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• Replace lib name

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• serial

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• Update Travis file

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Commits on Jun 3, 2021

• Add dl

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Commits on Jun 6, 2021

• Fix iterations over chunks

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• Fix region slabs dimensions

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Commits on Jun 7, 2021

• Tentative to incrementally write planar chunks to compound typed dataset

  johltn

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• Planar dataset writing ok for simple example

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  367f4ba

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• Start cleaning before cosntant chunks handling

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  e018ef7

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• Writing preparation to constant chunks dataset

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  7a41f0f

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• Write constant chunks + region references

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• Change dimensions types to comply with clang compilator

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Commits on Jun 8, 2021

• Modify control flow

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Commits on Jun 17, 2021

• Start handling voxels stored as integers

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Commits on Jun 21, 2021

• Store operations as groups containing chunk datasets

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Commits on Jul 10, 2021

• option to specify padding

  aothms

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• Delete appveyor.yml

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• Create test for HDF libs

  

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  c7143b9

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• boolean operation fixes

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• decribe_components() zero() plane()

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• Add missing include

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• intersection fixes

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• describe_group_by()

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• Use {0,1} voxelset for traversal on PRODUCT_ID method

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• Fix hardcoded chunk size

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• Add chunk size to log output

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• shift() on uint storage

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• sweep until

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• constant_like(type=)

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• mesh(groups=)

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• Remove debugging

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• don't traverse chunks on max_depth

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• uint storage option for traversal

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• export_csv()

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• Abstract writer class with Hdf writer subclass

  

  johltn

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  aothms

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• Start iteration through continuous chunk

  

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  aothms

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  abe3c74

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• Read bits stream and start with HDF5

  

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  aothms

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• initialize num_threads

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• don't assign to first when skipped over interval

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• voxel storage copy_as() method

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• multi-threaded geometry creation

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• multi threaded VOLUME_PRODUCT_ID

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• multi-threaded group_by()

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• respect with_components in mesh()

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• copy(type=) command

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• dist: focal

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• Update .travis.yml

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• Update .travis.yml

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• Store bit values into HDF file

  

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  aothms

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  69a4f1c

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• Hyperslab writing on fixed dataset dimensions and add test case

  

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  authored and

  aothms

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  1343f77

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• Write multidimensional dataset for continuous chunks

  

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  aothms

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  7a15675

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• don't attempt full chunk union on non-bit types

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  c76b91d

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• print_values() debugging option

  aothms

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  18957a4

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• more chunk union fixes

  aothms

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• Use extents to write multidimensional HDF

  

  johltn

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  aothms

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  f0cef42

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• Handle constant null storage chunks

  

  johltn

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  aothms

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  12438d1

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• more optimal meshing in case of many chunks

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  c2dea44

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• Support for functions and small grammar changes

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• Better control flow

  

  johltn

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  aothms

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  2640dc3

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• Count all chunks and make planar explicit

  

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  aothms

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  8120ab4

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• Write bits incrementally

  

  johltn

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  aothms

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  fae86ec

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• Incrementally write dataset regions in Region dataset

  

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  aothms

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  b34b14a

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• New test case

  

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  aothms

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• Install hdf5

  

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  aothms

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• Add pathes to include and lib dirs

  

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• Add quotes

  

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• Add subdir for include path

  

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• Move HDF installation variables

  

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• Libraries variable

  

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• Update Travis file

  

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• Update Travis file

  

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• serial

  

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• Replace lib name

  

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• serial

  

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• Update Travis file

  

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• Add dl

  

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• Fix iterations over chunks

  

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• Fix region slabs dimensions

  

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  aothms

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  835a060

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• Tentative to incrementally write planar chunks to compound typed dataset

  

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  authored and

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• Planar dataset writing ok for simple example

  

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  aothms

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  d196c31

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• Start cleaning before cosntant chunks handling

  

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  db46840

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• Writing preparation to constant chunks dataset

  

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• Write constant chunks + region references

  

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  075e55d

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• Change dimensions types to comply with clang compilator

  

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• Modify control flow

  

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• Start handling voxels stored as integers

  

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• Store operations as groups containing chunk datasets

  

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Commits on Jan 25, 2022

• Merge branch 'opensourceBIM:HDF5' into HDF5

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Commits on Feb 3, 2022

• Voxelization toolkit works with IfcOpenShell v0.7.0 including HDF support

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