version 2.1.1 -- add ci and cDNA fasta bug fix #203
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
The reference name would be like this. >`>ENST00000290810 cdna chromosome:GRCh38:16:66802878:66830976:-1 gene:ENSG00000159593.15 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:NAE1 description:NEDD8 activating enzyme E1 subunit 1 [Source:HGNC Symbol;Acc:HGNC:621]` The old cold will store the transcript id as `ENST00000290810 cdna chromosome:GRCh38:16:66802878:66830976:-1 gene:ENSG00000159593`, which was not able to use in the converting transcriptome locations to genome locations.
Revert "fixing bug for Ensembl cDNA fasta"
fixing bug for Ensembl cDNA fasta
update version to 2.1.1
yuukiiwa
changed the title
Repackage xpore & add Yuk Kei's CI
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
3 participants
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Summary
xPore v2.1 has some minor changes from the previous version, which include the following.
dataprep, which can now handle transcriptome fasta files without transcript versionspyteston testingdiffmodWhat's Changed
pytestintegrated by @yuukiiwa in add ci #204pytesttestingdiffmodby @yuukiiwa in add ci #202readFasta()to handle transcriptome fasta without transcript versions by @loganylchen in fixing bug for Ensembl cDNA fasta #201New Contributors