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Update EnsemblSearchDumps_conf.pm #990

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838203f
Update EnsemblSearchDumps_conf.pm
vinay-ebi Mar 5, 2025
7650867
Update genesearch_solr.py
vinay-ebi Mar 5, 2025
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4 changes: 2 additions & 2 deletions modules/Bio/EnsEMBL/Production/Pipeline/PipeConfig/EnsemblSearchDumps_conf.pm
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Original file line number Diff line number Diff line change
Expand Up @@ -27,7 +27,7 @@ use warnings;
use base ('Bio::EnsEMBL::Production::Pipeline::PipeConfig::Base_conf');

use Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf;
use Bio::EnsEMBL::Hive::Version 2.5;
use Bio::EnsEMBL::Hive::Version;

sub default_options {
my ($self) = @_;
Expand Down Expand Up @@ -147,4 +147,4 @@ sub resource_classes {
}
}

1;
1;
2 changes: 1 addition & 1 deletion nextflow/nf-py-scripts/genesearch_solr.py
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Expand Up @@ -126,7 +126,7 @@ def fetch_gene_info(core_db_connection, specie_production_name, genome_uuid):
) \
.select_from(Gene) \
.join(Transcript, Transcript.gene_id == Gene.gene_id) \
.join(Xref, Gene.display_xref_id == Xref.xref_id) \
.outerjoin(Xref, Gene.display_xref_id == Xref.xref_id) \
.join(SeqRegion, Gene.seq_region_id == SeqRegion.seq_region_id) \
.join(CoordSystem, SeqRegion.coord_system_id == CoordSystem.coord_system_id) \
.join(SeqRegionAttrib, SeqRegion.seq_region_id == SeqRegionAttrib.seq_region_id) \
Expand Down