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Crash if dna_reference not provided

bugSomething isn't workingSomething isn't working

Status: Open.

#81 In DessimozLab/read2tree;

· nromashchenko opened on Nov 14, 2025

Can't process whitespaces in the read filenames

Status: Open.

Bug

#80 In DessimozLab/read2tree;

· nromashchenko opened on Nov 12, 2025

reat2tree run seems to go well but species not added to the tree.

Status: Open.

#79 In DessimozLab/read2tree;

· mathildeparis opened on Oct 27, 2025

OMA

Status: Open.

#68 In DessimozLab/read2tree;

· cyxiang1027 opened on Jul 15, 2025

Question: generate marker genes from mitochondrion refseq

Status: Open.

#67 In DessimozLab/read2tree;

· brutal588 opened on Oct 15, 2024

TypeError: cannot unpack non-iterable NoneType object

Status: Open.

#60 In DessimozLab/read2tree;

· pengyan19 opened on Apr 17, 2024

AttributeError when running OGset.py

Status: Open.

#59 In DessimozLab/read2tree;

· scuadros28 opened on Mar 8, 2024

BUG?: KeyError(s) when running read2tree

Status: Open.

#58 In DessimozLab/read2tree;

· almosnow opened on Mar 6, 2024

QUESTION: Hetero sites.

Status: Open.

#53 In DessimozLab/read2tree;

· brgonzlez opened on Dec 11, 2023

Adding species but not repeating the mapping of existing species

enhancementNew feature or requestNew feature or request

questionFurther information is requestedFurther information is requested

Status: Open.

#51 In DessimozLab/read2tree;

· QuyANgo opened on Nov 29, 2023

IndexError: list assignment index out of range in Mapper.py

Status: Open.

#46 In DessimozLab/read2tree;

· bernard-kim opened on Oct 16, 2023

RuntimeError: generator raised StopIteration

Status: Open.

#45 In DessimozLab/read2tree;

· bernard-kim opened on Oct 16, 2023