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Sep 8, 2025
Merged

nextgen assay_metadata updates #574

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0023d42
cor_graphical report edits for iliad 202p
yiwenlu Sep 3, 2025
e28b1a9
edit lloq and uloq for bAb assays in the nextgen mock assay_metadata …
yiwenlu Sep 4, 2025
cc0e9df
more edits on assay_metadata
yiwenlu Sep 4, 2025
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40 changes: 20 additions & 20 deletions assay_metadata/iliad_ib202p_assay_metadata.csv
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Original file line number Diff line number Diff line change
@@ -1,23 +1,23 @@
panel,order_in_panel,antigen,assay,lloq,uloq,lod,pos.cutoff,assay_label,assay_label_short,llox_label,for_correlates
Nasal_IgA,1,WCE,WCE_Nasal_IgA,0.8192,500,NA,0.8192,Whole Cell Extract (AU/mL) (Absolute S-IgA),"WCE S-IgA (AU/mL)",lloq,1
Nasal_IgA,2,FHA,FHA_Nasal_IgA,0.085,130,NA,0.085,Filamentous Hemagglutinin (IU/mL) (Absolute S-IgA),"FHA S-IgA (IU/mL)",lloq,1
Nasal_IgA,3,FIM,FIM_Nasal_IgA,0.131,200,NA,0.131,Fimbriae types 2 and 3 (AU/mL) (Absolute S-IgA),"Fim2/3 S-IgA (AU/mL)",lloq,1
Nasal_IgA,4,PRN,PRN_Nasal_IgA,0.055,84,NA,0.055,Pertactin (IU/mL) (Absolute S-IgA),"Prn S-IgA (IU/mL)",lloq,1
Nasal_IgA,5,PT,PT_Nasal_IgA,0.085,130,NA,0.085,Pertussis Toxin (IU/mL) (Absolute S-IgA),"PT S-IgA (IU/mL)",lloq,1
Norm_Nasal_IgA,1,WCE,WCE_Norm_Nasal_IgA,NA,Inf,NA,NA,Whole Cell Extract (AU/(mg IgA)) (Normalized S-IgA),"WCE Norm S-IgA (AU/mg)",lloq,1
Norm_Nasal_IgA,2,FHA,FHA_Norm_Nasal_IgA,NA,Inf,NA,NA,Filamentous Hemagglutinin (IU/(mg IgA)) (Normalized S-IgA),"FHA Norm S-IgA (IU/mg)",lloq,1
Norm_Nasal_IgA,3,FIM,FIM_Norm_Nasal_IgA,NA,Inf,NA,NA,Fimbriae types 2 and 3 (AU/(mg IgA)) (Normalized S-IgA),"Fim2/3 Norm S-IgA (AU/mg)",lloq,1
Norm_Nasal_IgA,4,PRN,PRN_Norm_Nasal_IgA,NA,Inf,NA,NA,Pertactin (IU/(mg IgA)) (Normalized S-IgA),"Prn Norm S-IgA (IU/mg)",lloq,1
Norm_Nasal_IgA,5,PT,PT_Norm_Nasal_IgA,NA,Inf,NA,NA,Pertussis Toxin (IU/(mg IgA)) (Normalized S-IgA),"PT Norm S-IgA (IU/mg)",lloq,1
Serum_IgA,1,WCE,WCE_Serum_IgA,16.38,10000,NA,16.38,Whole Cell Extract (AU/mL) (Serum IgA),"WCE Serum IgA (AU/mL)",lloq,1
Serum_IgA,2,FHA,FHA_Serum_IgA,1.704,2600,NA,1.704,Filamentous Hemagglutinin (IU/mL) (Serum IgA),"FHA Serum IgA (IU/mL)",lloq,1
Serum_IgA,3,FIM,FIM_Serum_IgA,2.621,4000,NA,2.621,Fimbriae types 2 and 3 (AU/mL) (Serum IgA),"Fim2/3 Serum IgA (AU/mL)",lloq,1
Serum_IgA,4,PRN,PRN_Serum_IgA,1.101,1680,NA,1.101,Pertactin (IU/mL) (Serum IgA),"Prn Serum IgA (IU/mL)",lloq,1
Serum_IgA,5,PT,PT_Serum_IgA,1.704,2600,NA,1.704,Pertussis Toxin (IU/mL) (Serum IgA),"PT Serum IgA (IU/mL)",lloq,1
Serum_IgG,1,WCE,WCE_Serum_IgG,8.192,5000,NA,8.192,Whole Cell Extract (AU/mL) (Serum IgG),"WCE Serum IgG (AU/mL)",lloq,1
Serum_IgG,2,FHA,FHA_Serum_IgG,1.704,2600,NA,1.704,Filamentous Hemagglutinin (IU/mL) (Serum IgG),"FHA Serum IgG (IU/mL)",lloq,1
Serum_IgG,3,FIM,FIM_Serum_IgG,1.311,2000,NA,1.311,Fimbriae types 2 and 3 (AU/mL) (Serum IgG),"Fim2/3 Serum IgG (AU/mL)",lloq,1
Serum_IgG,4,PRN,PRN_Serum_IgG,0.852,1300,NA,0.852,Pertactin (IU/mL) (Serum IgG),"Prn Serum IgG (IU/mL)",lloq,1
Serum_IgG,5,PT,PT_Serum_IgG,4.391,6700,NA,4.391,Pertussis Toxin (IU/mL) (Serum IgG),"PT Serum IgG (IU/mL)",lloq,1
Nasal_IgA,1,WCE,WCE_Nasal_IgA,0.8192,500,NA,0.8192,Whole Cell Extract (AU/mL) (Absolute S-IgA),"WCE S-IgA (AU/mL)",lloq,1
Nasal_IgA,2,FHA,FHA_Nasal_IgA,0.085,130,NA,0.085,Filamentous Hemagglutinin (IU/mL) (Absolute S-IgA),"FHA S-IgA (IU/mL)",lloq,1
Nasal_IgA,3,FIM,FIM_Nasal_IgA,0.131,200,NA,0.131,Fimbriae types 2 and 3 (AU/mL) (Absolute S-IgA),"Fim2/3 S-IgA (AU/mL)",lloq,1
Nasal_IgA,4,PRN,PRN_Nasal_IgA,0.055,84,NA,0.055,Pertactin (IU/mL) (Absolute S-IgA),"Prn S-IgA (IU/mL)",lloq,1
Nasal_IgA,5,PT,PT_Nasal_IgA,0.085,130,NA,0.085,Pertussis Toxin (IU/mL) (Absolute S-IgA),"PT S-IgA (IU/mL)",lloq,1
Norm_Nasal_IgA,1,WCE,WCE_Norm_Nasal_IgA,NA,Inf,NA,NA,Whole Cell Extract (AU/(mg IgA)) (Normalized S-IgA),"WCE Norm S-IgA (AU/mg)",lloq,1
Norm_Nasal_IgA,2,FHA,FHA_Norm_Nasal_IgA,NA,Inf,NA,NA,Filamentous Hemagglutinin (IU/(mg IgA)) (Normalized S-IgA),"FHA Norm S-IgA (IU/mg)",lloq,1
Norm_Nasal_IgA,3,FIM,FIM_Norm_Nasal_IgA,NA,Inf,NA,NA,Fimbriae types 2 and 3 (AU/(mg IgA)) (Normalized S-IgA),"Fim2/3 Norm S-IgA (AU/mg)",lloq,1
Norm_Nasal_IgA,4,PRN,PRN_Norm_Nasal_IgA,NA,Inf,NA,NA,Pertactin (IU/(mg IgA)) (Normalized S-IgA),"Prn Norm S-IgA (IU/mg)",lloq,1
Norm_Nasal_IgA,5,PT,PT_Norm_Nasal_IgA,NA,Inf,NA,NA,Pertussis Toxin (IU/(mg IgA)) (Normalized S-IgA),"PT Norm S-IgA (IU/mg)",lloq,1
Serum_IgA,1,WCE,WCE_Serum_IgA,16.38,10000,NA,16.38,Whole Cell Extract (AU/mL) (Serum IgA),"WCE Serum IgA (AU/mL)",lloq,1
Serum_IgA,2,FHA,FHA_Serum_IgA,1.704,2600,NA,1.704,Filamentous Hemagglutinin (IU/mL) (Serum IgA),"FHA Serum IgA (IU/mL)",lloq,1
Serum_IgA,3,FIM,FIM_Serum_IgA,2.621,4000,NA,2.621,Fimbriae types 2 and 3 (AU/mL) (Serum IgA),"Fim2/3 Serum IgA (AU/mL)",lloq,1
Serum_IgA,4,PRN,PRN_Serum_IgA,1.101,1680,NA,1.101,Pertactin (IU/mL) (Serum IgA),"Prn Serum IgA (IU/mL)",lloq,1
Serum_IgA,5,PT,PT_Serum_IgA,1.704,2600,NA,1.704,Pertussis Toxin (IU/mL) (Serum IgA),"PT Serum IgA (IU/mL)",lloq,1
Serum_IgG,1,WCE,WCE_Serum_IgG,8.192,5000,NA,8.192,Whole Cell Extract (AU/mL) (Serum IgG),"WCE Serum IgG (AU/mL)",lloq,1
Serum_IgG,2,FHA,FHA_Serum_IgG,1.704,2600,NA,1.704,Filamentous Hemagglutinin (IU/mL) (Serum IgG),"FHA Serum IgG (IU/mL)",lloq,1
Serum_IgG,3,FIM,FIM_Serum_IgG,1.311,2000,NA,1.311,Fimbriae types 2 and 3 (AU/mL) (Serum IgG),"Fim2/3 Serum IgG (AU/mL)",lloq,1
Serum_IgG,4,PRN,PRN_Serum_IgG,0.852,1300,NA,0.852,Pertactin (IU/mL) (Serum IgG),"Prn Serum IgG (IU/mL)",lloq,1
Serum_IgG,5,PT,PT_Serum_IgG,4.391,6700,NA,4.391,Pertussis Toxin (IU/mL) (Serum IgG),"PT Serum IgG (IU/mL)",lloq,1
SBA,1,NA,PRN_Neg_SBA,20,Inf,NA,20,Serum Bactericidal Activity Pertactin- (Titer),SBA PRN- (Titer),lloq,1
SBA,2,NA,PRN_Pos_SBA,9,Inf,NA,9,Serum Bactericidal Activity Pertactin+ (Titer),SBA PRN+ (Titer),lloq,1
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