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ChaissonLab

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  1. LRA LRA Public

    Long read aligner

    C++ 115 8

  2. vamos vamos Public

    VNTR annotation using motif selection

    C 32 6

  3. danbing-tk danbing-tk Public

    Toolkit for VNTR genotyping and repeat-pan genome graph construction

    C++ 25 4

  4. TT-Mars TT-Mars Public

    Structural Variants Assessment Based on Haplotype-resolved Assemblies

    Python 21 4

  5. hmcnc hmcnc Public

    Forked from redndgreen8/hmcnc

    Hidden Markov Model based Copy number caller

    C++ 20

  6. SegDupAnnotation SegDupAnnotation Public

    Python 9 2

Repositories

Showing 10 of 29 repositories
  • danbing-tk Public

    Toolkit for VNTR genotyping and repeat-pan genome graph construction

    ChaissonLab/danbing-tk’s past year of commit activity
    C++ 25 BSD-3-Clause 4 6 1 Updated Apr 22, 2025
  • countme Public

    Counts methylated CpG's in reads according to intervals in a bed file. Meant for inserted sequences.

    ChaissonLab/countme’s past year of commit activity
    0 0 0 0 Updated Apr 18, 2025
  • vamos Public

    VNTR annotation using motif selection

    ChaissonLab/vamos’s past year of commit activity
    C 32 GPL-2.0 6 10 1 Updated Apr 15, 2025
  • raava Public

    Rare tandem repeat variant detection

    ChaissonLab/raava’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 15, 2025
  • ukb-danbing-raava Public

    danbing-tk + raava analysis pipeline for UK BioBank

    ChaissonLab/ukb-danbing-raava’s past year of commit activity
    0 MIT 0 0 0 Updated Apr 14, 2025
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    ChaissonLab/bioconda-recipes’s past year of commit activity
    Shell 0 MIT 3,477 0 0 Updated Feb 18, 2025
  • Ctyper Public Forked from Walfred-MA/Ctyper

    Genotyping of paralog specific gene types

    ChaissonLab/Ctyper’s past year of commit activity
    C++ 5 MIT 2 0 0 Updated Feb 17, 2025
  • rare-var-scratch Public
    ChaissonLab/rare-var-scratch’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 1 0 0 Updated Jan 14, 2025
  • SegDupAnnotation2 Public

    Count gene duplications.

    ChaissonLab/SegDupAnnotation2’s past year of commit activity
    Python 2 1 0 0 Updated Jan 8, 2025
  • L1Scan Public

    Scan a bam file for l1 insertions.

    ChaissonLab/L1Scan’s past year of commit activity
    C++ 0 0 0 0 Updated Dec 17, 2024
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