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Center for Admixture Science and Technology

3 followers
http://admixgenomics.ucsd.edu/

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haptools haptools Public

Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis

Python 24 4

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Showing 10 of 15 repositories

pgb-mvp Public Forked from turner/pg-spike-pan-zoom
pangenome browser mvp

CAST-genomics/pgb-mvp’s past year of commit activity

JavaScript 0 2 0 0 Updated Aug 10, 2025
cast-workflows Public
Workflows used by the Center for Admixture Science and Technology

CAST-genomics/cast-workflows’s past year of commit activity

Python 2 2 1 5 Updated Aug 6, 2025
pangenome-api Public

CAST-genomics/pangenome-api’s past year of commit activity

Python 0 0 0 0 Updated Jul 10, 2025
panCT Public
Our pangenome analysis toolkit

CAST-genomics/panCT’s past year of commit activity

Python 1 0 3 3 Updated Jun 23, 2025
haptools Public
Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis

CAST-genomics/haptools’s past year of commit activity

Python 24 MIT 4 11 (1 issue needs help) 4 Updated Mar 27, 2025
hla_haplotypes Public

CAST-genomics/hla_haplotypes’s past year of commit activity

0 0 0 0 Updated Mar 4, 2025
pipsort Public

CAST-genomics/pipsort’s past year of commit activity

C++ 4 AGPL-3.0 0 0 0 Updated Feb 1, 2025
personal-genomics-textbook Public
Textbook for CSE284: Personal Genomics

CAST-genomics/personal-genomics-textbook’s past year of commit activity

Jupyter Notebook 2 MIT 0 1 1 Updated Oct 27, 2024
CAST-genomics.github.io Public
CAST website

CAST-genomics/CAST-genomics.github.io’s past year of commit activity

HTML 0 2 0 0 Updated Oct 24, 2024
snakemake-gfa-complexity Public

CAST-genomics/snakemake-gfa-complexity’s past year of commit activity

Python 0 MIT 0 0 0 Updated Jul 2, 2024

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