Change to use new AtlasCentricPreprocessor #160
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Fix typing and logic issues
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Pull Request Overview
Updates the CLI to use the new AtlasCentricPreprocessor class instead of the deprecated Preprocessor class, with improved typing and parameter handling.
- Replaces Preprocessor import with AtlasCentricPreprocessor
- Fixes list initialization bug in modality processing loop
- Improves parameter handling for optional atlas configuration
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…om:BrainLesion/preprocessing into 156-feature-cli-uses-outdated-preprocessor
neuronflow
approved these changes
Sep 4, 2025
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Fix typing and logic issues