Health Hack 2015

This is our server

ssh [email protected]

Our whiteborad plan

Aims:

• To write file parsers to parse fastqc, vcf and coverage files
• To write parsed output into mongoDB
• To query the database to extract the relevant info
• To visualise relevant information

Instructions for creating and using mongoDB

from pymongo improt MongoClient

connection = MongoClient("mongo://localhost:27017")

db_test = connection.healthhack.test

test_dict = {}

db_test.insert(test_dict)

results = db_test.find()

for result in results:
    print result

Git how to

1. fork https://github.com/serine/HeHackSheHack this repo to your github
2. git clone yourv version https://github.com/YOURUserName/HeHackSheHack.git
3. don't delete anyfiles just add your code files to that repo
4. git add your files git commit -m your files
5. git push your files to your own repo
6. send pull request

Hosting files from the server

If you like to host html or any other files put them into ~/www directory and access it as such http://146.118.98.44/home/$USER/yourFile.html