This directory was created for the initial analyses of creating a gene-based pangenome. It has quickly turned into a repository for storing all scripts related to genome assembly, gene annotation, SV calling, GFF/FA file manipulation, functional enrichment analysis, gene set visualization, and syntelog decompression.
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This repository contains the scripts used to assess the presence/absence of Caenorhabditis elegans ref genome genes across all wild strains. Genes are classified as "core", "soft-core", "rare", or "private" based on the frequency at which they occur in wild strains.
AndersenLab/Ce_geneAnno-sh
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This repository contains the scripts used to assess the presence/absence of Caenorhabditis elegans ref genome genes across all wild strains. Genes are classified as "core", "soft-core", "rare", or "private" based on the frequency at which they occur in wild strains.
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