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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 26 17

  2. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 12 3

  3. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 12 6

  4. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 12 12

  5. segmentation-skeleton-metrics segmentation-skeleton-metrics Public

    A Python package for evaluating the topological accuracy of a neuron segmentation by computing skeleton-based metrics.

    Python 8

  6. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 8 3

Repositories

Showing 10 of 440 repositories
  • analysis-pipeline-utils Public

    Utilities to facilitate writing scientific analysis pipelines to run in Code Ocean, in conjunction with S3 and DocumentDB storage

    AllenNeuralDynamics/analysis-pipeline-utils’s past year of commit activity
    Python 0 MIT 0 4 1 Updated Jul 30, 2025
  • aind-mri-targeting Public

    Scripts and useful functions to plan neuroscience experiments using structural MRIs

    AllenNeuralDynamics/aind-mri-targeting’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 30, 2025
  • aind-analysis-pipeline-template Public

    Pipeline with job dispatch and analysis wrapper capsules that serves as template for analysis

    AllenNeuralDynamics/aind-analysis-pipeline-template’s past year of commit activity
    Nextflow 0 MIT 0 1 1 Updated Jul 30, 2025
  • aind-analysis-job-dispatch Public

    Capsule to create the input job model for analysis wrapper

    AllenNeuralDynamics/aind-analysis-job-dispatch’s past year of commit activity
    Python 0 MIT 0 2 0 Updated Jul 30, 2025
  • clabe Public

    Command-line-interface Launcher for AIND Behavior Experiments

    AllenNeuralDynamics/clabe’s past year of commit activity
    Python 0 MIT 0 7 2 Updated Jul 30, 2025
  • Aind.Behavior.Services Public

    A library for defining and maintaining behavior tasks.

    AllenNeuralDynamics/Aind.Behavior.Services’s past year of commit activity
    Python 1 MIT 0 6 2 Updated Jul 30, 2025
  • aind-metadata-service Public

    Service to retrieve Labtracks/Sharepoint info using a REST API

    AllenNeuralDynamics/aind-metadata-service’s past year of commit activity
    Python 3 MIT 1 10 (1 issue needs help) 0 Updated Jul 30, 2025
  • dynamic-foraging-task Public

    Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control

    AllenNeuralDynamics/dynamic-foraging-task’s past year of commit activity
    Python 5 MIT 4 26 (4 issues need help) 8 Updated Jul 30, 2025
  • Aind.Behavior.DynamicForaging Public

    A repository for the Dynamic Foraging task.

    AllenNeuralDynamics/Aind.Behavior.DynamicForaging’s past year of commit activity
    Python 0 0 0 2 Updated Jul 30, 2025
  • aind-z1-camera-alignment Public

    Code to align spectrally adjacent channels in Zeiss Lightsheet 7 (Z1) datasets

    AllenNeuralDynamics/aind-z1-camera-alignment’s past year of commit activity
    Python 0 MIT 0 5 2 Updated Jul 30, 2025
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