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Aaryesh-AD/README.md

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Hi thereπŸ‘‹, I am Aaryesh Deshpande


πŸ§‘β€πŸ’» About Me

I'm a Master’s student in Bioinformatics at Georgia Tech, specializing in Molecular Dynamics (MD), Machine Learning for Drug Discovery, and Structural Bioinformatics. My research focuses on developing innovative computational toolkits, software and analysis pipelines for advance drug discovery and enzyme studies. Currently, I am currently exploring protein language models for enzyme study and advanced deep learning techniques to enhance the accuracy and efficiency of MD simulations, aiming for effective modeling of biological problems. In addition to my work in Bioinformatics and computational drug discovery, I am also a front-end web developer specializing in Svelte and a 3D artist specializing in Cinema 4D and Houdini.


πŸ”¬ Research Interests

  • Allosteric Regulation and Enzyme Engineering
  • Machine Learning for Molecular Dynamics and Drug Discovery
  • Bioinformatics Software and Pipeline Development

πŸ› οΈ Tech Stack

Languages, Frameworks and Tools

Tech Stack

Python Libraries

TensorFlow, PyTorch, Scikit-learn, OpenCV, KivyMD, PyQt, Flask, pandas, NumPy, Biopython, RDkit, DeepChem, MDAnalysis


πŸ“Œ Featured Projects

πŸ”Ή GU Drug-Pro Toolkit
A bioinformatics toolkit for early-stage drug discovery, integrating ML-powered ADMET screening.

πŸ”Ή Sequence Cluster & Consensus Tool
Hybrid clustering & sequence reconstruction for downstream MD simulations.


πŸ“Š GitHub Stats


🌐 Let's Connect

LinkedIn - Aaryesh Deshpande ' Work Email ' Personal Email



"Life is nothing but an electron looking for a place to rest."

– Albert Szent-GyΓΆrgyi


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  1. GU-Drug-Pro-Toolkit GU-Drug-Pro-Toolkit Public

    A Comprehensive Tool for Drug Property and Likeness Prediction.

    Python 1

  2. Sequence-cluster-consensus Sequence-cluster-consensus Public

    Scripts for clustering protein sequences, generating consensus sequences that represent a common representative of the cluster, and identifying representative medoid sequences for each cluster as t…

    Jupyter Notebook 1

  3. Swiss_Model_Batch_Processor Swiss_Model_Batch_Processor Public

    Designed for batch submission of multiple target sequences using a single structural template in SwissModel

    Python 2 1

  4. Simple-PDB-cleaner Simple-PDB-cleaner Public

    PDB Structure Cleaning and Preprocessing Script using Biopython

    Python