Add gradient checks for SBML test suite

[dilpath]

No description provided.

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 74.87%. Comparing base (8469a18) to head (7bdb35c).
Report is 1 commits behind head on main.

❗ There is a different number of reports uploaded between BASE (8469a18) and HEAD (7bdb35c). Click for more details.

HEAD has 5 uploads less than BASE

Flag	BASE (8469a18)	HEAD (7bdb35c)
python	4	1
cpp_python	1	0
cpp	1	0

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #2093      +/-   ##
==========================================
- Coverage   80.30%   74.87%   -5.44%     
==========================================
  Files         328      328              
  Lines       22365    21652     -713     
  Branches     1512     1503       -9     
==========================================
- Hits        17960    16211    -1749     
- Misses       4394     4813     +419     
- Partials       11      628     +617     

Flag	Coverage Δ
cpp	?
cpp_python	?
petab	39.34% <ø> (ø)
python	71.80% <ø> (-2.67%)	⬇️
sbmlsuite-jax	34.14% <ø> (ø)

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see 53 files with indirect coverage changes

🚀 New features to boost your workflow:

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[dweindl]

TODO:

• FAILED tests/testSBMLSuite.py::test_sbml_testsuite_case[2] - UserWarning: Point has no component in this direction. Set ``Computer.relative_size=False`` to avoid this. Using default small step size ``fiddy.EPSILON``: 1e-05
• FAILED tests/testSBMLSuite.py::test_sbml_testsuite_case[51] - RuntimeWarning: Mean of empty slice
• FAILED tests/testSBMLSuite.py::test_sbml_testsuite_case[164] - ValueError: cannot reshape array of size 2 into shape (51,2,2)
• FAILED tests/testSBMLSuite.py::test_sbml_testsuite_case[198] - ValueError: all input arrays must have the same shape
• For now, skip gradient checks for all models that require further hyperparameter tuning

[sonarqubecloud]

Quality Gate passed

Issues
6 New issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarCloud

[sonarqubecloud]

Quality Gate passed

Issues
5 New issues
0 Accepted issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarQube Cloud