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‎_pages/profiles.md

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description: Treangen lab members
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nav: true
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nav_order: 1
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display_categories: [PI, Students, Senior Personnel]
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display_categories: [PI, Senior Personnel, Graduate Students, Undergraduate Students, Alumni]
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horizontal: false
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---
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‎_posts/2024-4-02-mwang.md

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---
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layout: post
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title: Michael Wang now Dr. Wang!
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date: 2025-04-02 15:32:13
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description: PhD defense
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tags: Michael
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categories: labnews
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giscus_comments: true
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tabs: true
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---
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Michael passed his Ph.D. defense with flying colors, congrats Michael and thank you for all of the contributions to the lab!
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Committee members:
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- Dr. Todd Treangen (Rice CS)
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- Dr. Omid Veiseh (Rice BIOE)
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- Dr. Lauren Stadler (Rice CEVE)
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- Dr. Caleb Bashor (Rice BIOE)

‎_posts/2025-01-27-drbryce.md

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---
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layout: post
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title: Bryce Kille now Dr. Kille!
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date: 2025-01-27 15:32:13
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description: Thesis proposal defense
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tags: bryce
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categories: labnews
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giscus_comments: true
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tabs: true
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---
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Bryce passed his Ph.D. defense with flying colors, congrats Bryce and thank you for all of the contributions to the lab!
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Committee members:
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- Dr. Adam Phillippy (NIH NHGRI)
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- Dr. Caleb Bashor (Rice BIOE)
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- Dr. Fritz Sedlazeck (BCM HGSC)
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- Dr. Lydia Kavraki (Rice CS)
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- Dr. Todd Treangen (Rice CS)

‎_profiles/apatel.md

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title: Anika Patel
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description: Undergraduate
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description: Graduate Student (Rice CS)
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img: assets/img/anika4.jpg
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importance: 1
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category: Students
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category: Alumni
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related_publications: false
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---
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Anika (Rice undergraduate senior, Computer Science) is very interested in computational biology, and has taken related bioinformatics and machine learning electives. Since joining the Treangen lab in the Spring semester of 2024, she has been working on characterizing gut microbiome samples using an autoencoder. She hopes to continue working on computational biology research after graduation. Outside of academics, Anika enjoys photography!
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Anika (Rice undergraduate senior, Computer Science) is very interested in computational biology, and has taken related bioinformatics and machine learning electives. During her time in the Treangen lab, she has been working on characterizing gut microbiome samples using an autoencoder. She hopes to continue working on computational biology research after graduation and is joining the Rice CS department as a PhD student Fall 2025. Outside of academics, Anika enjoys photography!

‎_profiles/bkille.md

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title: Bryce Kille
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description: 4th Year Ph.D. student, big fan all things sequence analysis, high-performance computing, and discrete algorithms.
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title: Dr. Bryce Kille
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description: Bioinformatics Scientist @ Illumina, big fan all things sequence analysis, high-performance computing, and discrete algorithms.
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img: assets/img/bryce4.jpg
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importance: 6
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category: Students
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importance: 1
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category: Alumni
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related_publications: true
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---
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Bryce (4th year PhD student, Computer Science) received his MS in Bioinformatics and BS in
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Bryce (now Bioinformatics Scientist at Illumina) received his PhD from Rice University in CS (Treangen lab) MS in Bioinformatics and BS in
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Computer Science + Chemistry from the University of Illinois at Urbana-Champaign. As an
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undergraduate, he worked at Dow Agrosciences in both the computational biology and cheminformatics
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groups. His projects included developing software for phylogeny analysis and creating models for
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One of his main interests is casting biological and chemical problems
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into theoretical computer science questions.
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As a PhD student, Bryce has worked on a range of sequence-analysis applications, such as
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As a PhD student, Bryce worked on a range of sequence-analysis applications, such as
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genome alignment {% cite kille2023minmers kille2024parsnp %} and variant calling
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{% cite kille2021accelerating %}.
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Bryce is currently a [NLM Biomedical Informatics predoctoral fellow](https://www.gulfcoastconsortia.org/home/training/bmi-nlm/)

‎_profiles/dongwei.md

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description: 1st Year Ph.D. student, interested in machine learning and computational biology.
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img: assets/img/dongwei4.jpg
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importance: 3
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category: Students
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category: Graduate Students
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related_publications: true
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‎_profiles/ehuang.md

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description: 3rd Year Ph.D. student, interested in Microbiome Analysis, Metagenomics Database, High Performance Computing, and Deep Learning
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img: assets/img/eddy4.jpg
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importance: 5
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category: Students
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category: Graduate Students
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related_publications: true
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---
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‎_profiles/fquinanta.md

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description: 3rd Year Ph.D. student interested in protein function prediction and model assessment.
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img: assets/img/felix4.jpg
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importance: 4
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category: Students
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category: Graduate Students
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related_publications: true
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---
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‎_profiles/mbarnett.md

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title: R. Matt Barnett
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description: Software Engineer
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img: assets/img/barnett.png
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img: assets/img/barnett4.jpg
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importance: 3
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category: Senior Personnel
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related_publications: false

‎_profiles/nkokroko.md

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description: 2nd Year Computer Science Ph.D. student, interested in microbiome analysis and metagenomics.
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img: assets/img/natalie4.jpg
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importance: 4
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category: Students
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category: Graduate Students
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related_publications: true
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‎_profiles/rdoughty.md

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description: 1st Year Compter Science Ph.D. student, interested in metagenomics and virome analysis.
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img: assets/img/ryan4.jpg
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importance: 2
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category: Students
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category: Graduate Students
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related_publications: true
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‎_profiles/rluo.md

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title: Rossie Luo
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description: 1st Year Ph.D. student, SSPB.
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description: 1st Year Ph.D. student, SSPB, multiple genome alignment and genotype-to-phenotype analysis
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img: assets/img/rluo4.jpg
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importance: 1
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category: Students
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category: Graduate Students
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related_publications: true
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features and applications of Parsnp, a fast and robust
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whole genome alignment tool.
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Her main interests are exploring the genotype-phenotype
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relationship while developing tools to enable and
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relationships while developing tools to enable and
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accelerate biological discoveries. In particular, she wants to
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learn more about the impact of genetic differences on
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protein structure/function and ultimately the fitness of an

‎_profiles/treangen.md

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title: Dr. Todd J. Treangen
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description: Associate Professor, Department of Computer Science, Rice University
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description: Associate Professor, Department of Computer Science (primary), Bioengineering, Ken Kennedy Institute, Rice University
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img: assets/img/treangen4.png
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importance: 1
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category: PI

‎_profiles/xwang.md

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title: Michael X. Wang
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title: Dr. Michael X. Wang
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description: 6th Year Bioengineering Ph.D. student. Lead developer of Olivar.
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img: assets/img/mwang4.jpg
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importance: 7
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category: Students
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category: Senior Personnel
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related_publications: true
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‎assets/img/barnett.JPG

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‎assets/img/barnett4.jpg

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