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Step 3: SAM to BAM

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mealser edited this page Jul 12, 2017 · 1 revision

Step 3: SAM to BAM [optional]:

Convert .sam to .bam to maintain a compressed data for efficient storage.

$ module load samtools
$ cd /u/project/zarlab/malser/MiCoP/eupathdbFasta_ConcatContigs/
$ samtools view -bS SRR3546361_MergedContigs_Sorted.sam > SRR3546361_MergedContigs_Sorted.bam
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