Skip to content

Commit 5d58d09

Browse files
committed
Wording improvement in GWAS notebook
1 parent 5a45432 commit 5d58d09

File tree

1 file changed

+1
-1
lines changed

1 file changed

+1
-1
lines changed

docs/examples/gwas_tutorial.ipynb

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -117,7 +117,7 @@
117117
"id": "plastic-running",
118118
"metadata": {},
119119
"source": [
120-
"We passed a few arguments to the `vcf_to_zarr` conversion function, so it only loads the first alternate allele (`max_alt_alleles=1`), and to load extra VCF fields we are interested in (`GT`, `DP`, `GQ`, and `AD`). Also, `AD` needed defining as having a `Number` definition of `R` (one value for each allele, including the reference), since the dataset we are using defines it as `.` which means \"unknown\".\n",
120+
"We passed a few arguments to the `vcf_to_zarr` conversion function, so it only converts the first alternate allele (`max_alt_alleles=1`), and to load extra VCF fields we are interested in (`GT`, `DP`, `GQ`, and `AD`). Also, `AD` needed defining as having a `Number` definition of `R` (one value for each allele, including the reference), since the dataset we are using defines it as `.` which means \"unknown\".\n",
121121
"\n",
122122
"Now the data has been written as Zarr, all downstream operations on will be much faster. Note that sgkit uses an [Xarray](http://xarray.pydata.org/en/stable/) dataset to represent the VCF data, where Hail uses MatrixTable."
123123
]

0 commit comments

Comments
 (0)