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Remove py3.9 (aiohttp failure)
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.github/workflows/apptainer.yml

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@@ -16,7 +16,7 @@ jobs:
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strategy:
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max-parallel: 5
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matrix:
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python: [3.8, 3.9, '3.10']
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python: [3.8, '3.10']
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fail-fast: false
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.github/workflows/main.yml

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@@ -30,25 +30,27 @@ jobs:
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uses: actions/checkout@v2
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- name: conda/mamba
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uses: mamba-org/provision-with-micromamba@main
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uses: mamba-org/setup-micromamba@v1
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with:
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micromamba-version: '1.4.3'
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environment-file: environment.yml
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extra-specs: |
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create-args: |
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python=${{ matrix.python }}
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cache-environment: true
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- name: install package itself
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shell: bash -l {0}
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shell: bash -el {0}
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run: |
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pip install .
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- name: Install dependencies
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shell: bash -l {0}
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shell: bash -el {0}
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run: |
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pip install coveralls pytest-cov pytest pytest-xdist
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- name: testing
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shell: bash -l {0}
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shell: bash -el {0}
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run: |
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pytest -v --cov-report term-missing --cov=sequana_pipelines.rnaseq
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