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lines changed Original file line number Diff line number Diff line change 16
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strategy :
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max-parallel : 5
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matrix :
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- python : [3.8, 3.9, '3.10']
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+ python : [3.8, '3.10']
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fail-fast : false
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Original file line number Diff line number Diff line change @@ -30,25 +30,27 @@ jobs:
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uses : actions/checkout@v2
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- name : conda/mamba
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- uses : mamba-org/provision-with- micromamba@main
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+ uses : mamba-org/setup- micromamba@v1
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with :
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+ micromamba-version : ' 1.4.3'
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environment-file : environment.yml
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- extra-specs : |
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+ create-args : |
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python=${{ matrix.python }}
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+ cache-environment : true
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- name : install package itself
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- shell : bash -l {0}
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+ shell : bash -el {0}
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run : |
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pip install .
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- name : Install dependencies
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- shell : bash -l {0}
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+ shell : bash -el {0}
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run : |
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pip install coveralls pytest-cov pytest pytest-xdist
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- name : testing
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- shell : bash -l {0}
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+ shell : bash -el {0}
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run : |
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pytest -v --cov-report term-missing --cov=sequana_pipelines.rnaseq
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