v1.10.0

Upgrading to support Python 3.13

What's Changed

• Adding additional check for return_dict query parameter by @maxsibilla in #875
• Maxsibilla/issue 879 by @maxsibilla in #881
• Updating Dockerfile to utilize Python 3.13 base image by @maxsibilla in #882

Full Changelog: v1.9.6...v1.10.0

v1.9.6

What's Changed

• Tjmadonna/api base image 1.3.5 by @maxsibilla in #872
• Libpitt/859 globus url by @maxsibilla in #868
• Add Collection.associated_publication - #858 by @maxsibilla in #866
• Maxsibilla/issue 860 by @maxsibilla in #864

Full Changelog: v1.9.5...v1.9.6

v1.9.5

What's Changed

• Removing LC-MS from Mass Spectrometry hierarchy by @maxsibilla in #845
• Maxsibilla/issue 851 by @maxsibilla in #853
• Maxsibilla/issue 839 by @maxsibilla in #847
• Maxsibilla/issue 848 by @maxsibilla in #850
• Tjmadonna/878 bulk processing incorrect path by @maxsibilla in #857

Full Changelog: v1.9.4...v1.9.5

v1.9.4

What's Changed

• Maxsibilla/priority project list by @maxsibilla in #819
• Maxsibilla/issue 820 by @maxsibilla in #822
• Maxsibilla/strip whitespace by @maxsibilla in #830
• Adding error_message field for datasets and uploads by @maxsibilla in #832
• Maxsibilla/multiple organ check by @maxsibilla in #834
• Maxsibilla/issue 836 by @maxsibilla in #838
• Updating set_dataset_sources to map the metadata for human sources by @maxsibilla in #841
• Updating mapped metadata for Sample source field by @maxsibilla in #842

Full Changelog: v1.9.2...v1.9.4

v1.9.2

What's Changed

• Adding new trigger for datasets to return primary dataset uuid for de… by @maxsibilla in #808
• Maxsibilla/dataset hierarchy cosmx by @maxsibilla in #813
• Updating api-base-image to version 1.3.3 by @maxsibilla in #811
• Maxsibilla/exclude data path by @maxsibilla in #816
• Maxsibilla/bulk validate uploads by @maxsibilla in #805

Full Changelog: v1.9.1...v1.9.2

v1.9.1

What's Changed

• Bumping hubmap commons by @maxsibilla in #790
• Fixing psutil memory usage in status route by @maxsibilla in #796
• Libpitt/797 has qa trig by @maxsibilla in #803
• Maxsibilla/issue 792 by @maxsibilla in #794

Full Changelog: v1.9.0...v1.9.1

v1.9.0

Now supporting Organ FMA and UBERON codes instead of arbitrary 2 digit RUI codes for organs

What's Changed

• Tjmadonna/772 add specific mammary gland by @maxsibilla in #783

Full Changelog: v1.8.4...v1.9.0

v1.8.4

What's Changed

• Maxsibilla/id exlcusion by @maxsibilla in #754
• Removing deprecated origin_sample by @maxsibilla in #755
• Libpitt/757 exclude by @maxsibilla in #760
• Libpitt/757 exclude by @maxsibilla in #764
• Adding metadata to direct_ancestor embedded field used by Samples by @maxsibilla in #765
• Tjmadonna/formatting by @maxsibilla in #769
• Libpitt/773 organ other by @maxsibilla in #775
• Maxsibilla/fix query builder by @maxsibilla in #778
• Updating docker base image to 1.3.2 by @maxsibilla in #781
• Tjmadonna/machine status by @maxsibilla in #787

Full Changelog: v1.8.3...v1.8.4

v1.8.3

What's Changed

• Tjmadonna/dependency update by @maxsibilla in #737
• Tjmadonna/slim bookworm by @maxsibilla in #739
• Libpitt/742 excluded properties from public response by @maxsibilla in #744
• Avoid updating component status to published - #741 by @maxsibilla in #746
• Maxsibilla/issue 748 by @maxsibilla in #750

Full Changelog: v1.8.2...v1.8.3

v1.8.2

What's Changed

• Tjmadonna/704 parameterized queries by @maxsibilla in #732
• Tjmadonna/730 dataset title optimization by @maxsibilla in #734

Full Changelog: v1.8.1...v1.8.2