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Merge pull request #178 from sandialabs/ufjc-isometric-legendre
uFJC isometric legendre
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‎Cargo.toml‎

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[package]
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name = "polymers"
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version = "0.3.2"
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version = "0.3.3"
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edition = "2021"
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description = "Polymers Modeling Library"
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license = "BSD-3-Clause"

‎Project.toml‎

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name = "Polymers"
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uuid = "8aef037c-a721-4e8a-9d81-eb7093daef2c"
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authors = ["mrbuche <[email protected]>"]
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version = "0.3.2"
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version = "0.3.3"
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[deps]
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DocStringExtensions = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"

‎conftest.py‎

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import pytest
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from re import sub
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from sys import stdout
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from subprocess import run
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‎docs/source/physics/single_chain/efjc/thermodynamics/isometric.rst‎

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:maxdepth: 1
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Asymptotic <isometric/asymptotic>
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Legendre <isometric/legendre>
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.. autoclass:: polymers.physics.single_chain.efjc.thermodynamics.isometric::EFJC(number_of_links, link_length, hinge_mass, link_stiffness)
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.. autoattribute:: hinge_mass
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.. autoattribute:: link_stiffness
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.. autoattribute:: asymptotic
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.. autoattribute:: legendre

‎docs/source/physics/single_chain/ufjc/lennard_jones/thermodynamics.rst‎

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.. toctree::
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:maxdepth: 1
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Isometric <thermodynamics/isometric>
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Isotensional <thermodynamics/isotensional>
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.. autoclass:: polymers.physics.single_chain.ufjc.lennard_jones.thermodynamics::LENNARDJONESFJC(number_of_links, link_length, hinge_mass, link_stiffness)
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.. autoattribute:: link_length
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.. autoattribute:: hinge_mass
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.. autoattribute:: link_stiffness
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.. autoattribute:: isometric
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.. autoattribute:: isotensional

‎docs/source/physics/single_chain/ufjc/lennard_jones/thermodynamics/isometric.rst‎

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Lennard-Jones-FJC model thermodynamics (isometric)
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==================================================
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.. toctree::
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:maxdepth: 1
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Asymptotic <isometric/asymptotic>
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.. autoclass:: polymers.physics.single_chain.ufjc.lennard_jones.thermodynamics.isometric::LENNARDJONESFJC(number_of_links, link_length, hinge_mass, link_stiffness)
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.. autoattribute:: number_of_links
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.. autoattribute:: link_length
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.. autoattribute:: hinge_mass
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.. autoattribute:: link_stiffness
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.. autoattribute:: asymptotic

‎docs/source/physics/single_chain/ufjc/lennard_jones/thermodynamics/isometric/asymptotic.rst‎

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Lennard-Jones-FJC model thermodynamics (isometric/asymptotic)
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=============================================================
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.. toctree::
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:maxdepth: 1
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Reduced <asymptotic/reduced>
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Legendre <asymptotic/legendre>
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.. autoclass:: polymers.physics.single_chain.ufjc.lennard_jones.thermodynamics.isometric.asymptotic::LENNARDJONESFJC(number_of_links, link_length, hinge_mass, link_stiffness)
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.. autoattribute:: number_of_links
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.. autoattribute:: link_length
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.. autoattribute:: hinge_mass
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.. autoattribute:: link_stiffness
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.. autoattribute:: reduced
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.. autoattribute:: legendre

‎docs/source/physics/single_chain/ufjc/lennard_jones/thermodynamics/isometric/asymptotic/legendre.rst‎

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Lennard-Jones-FJC model thermodynamics (isometric/asymptotic/legendre)
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======================================================================
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.. autoclass:: polymers.physics.single_chain.ufjc.lennard_jones.thermodynamics.isometric.asymptotic.legendre::LENNARDJONESFJC(number_of_links, link_length, hinge_mass, link_stiffness)
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.. autoattribute:: number_of_links
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.. autoattribute:: link_length
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.. autoattribute:: hinge_mass
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.. autoattribute:: link_stiffness
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.. automethod:: force(end_to_end_length, temperature)
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.. automethod:: nondimensional_force(nondimensional_end_to_end_length_per_link)
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.. automethod:: helmholtz_free_energy(end_to_end_length, temperature)
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.. automethod:: helmholtz_free_energy_per_link(end_to_end_length, temperature)
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.. automethod:: relative_helmholtz_free_energy(end_to_end_length, temperature)
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.. automethod:: relative_helmholtz_free_energy_per_link(end_to_end_length, temperature)
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.. automethod:: nondimensional_helmholtz_free_energy(nondimensional_end_to_end_length_per_link, temperature)
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.. automethod:: nondimensional_helmholtz_free_energy_per_link(nondimensional_end_to_end_length_per_link, temperature)
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.. automethod:: nondimensional_relative_helmholtz_free_energy(nondimensional_end_to_end_length_per_link)
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.. automethod:: nondimensional_relative_helmholtz_free_energy_per_link(nondimensional_end_to_end_length_per_link)

‎docs/source/physics/single_chain/ufjc/lennard_jones/thermodynamics/isometric/asymptotic/reduced.rst‎

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Lennard-Jones-FJC model thermodynamics (isometric/asymptotic/reduced)
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=====================================================================
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.. toctree::
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:maxdepth: 1
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Legendre <reduced/legendre>
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.. autoclass:: polymers.physics.single_chain.ufjc.lennard_jones.thermodynamics.isometric.asymptotic.reduced::LENNARDJONESFJC(number_of_links, link_length, hinge_mass, link_stiffness)
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.. autoattribute:: number_of_links
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.. autoattribute:: link_length
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.. autoattribute:: hinge_mass
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.. autoattribute:: link_stiffness
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.. autoattribute:: legendre

‎docs/source/physics/single_chain/ufjc/lennard_jones/thermodynamics/isometric/asymptotic/reduced/legendre.rst‎

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Lennard-Jones-FJC model thermodynamics (isometric/asymptotic/reduced/legendre)
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==============================================================================
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.. autoclass:: polymers.physics.single_chain.ufjc.lennard_jones.thermodynamics.isometric.asymptotic.reduced.legendre::LENNARDJONESFJC(number_of_links, link_length, hinge_mass, link_stiffness)
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.. autoattribute:: number_of_links
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.. autoattribute:: link_length
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.. autoattribute:: hinge_mass
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.. autoattribute:: link_stiffness
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.. automethod:: force(end_to_end_length, temperature)
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.. automethod:: nondimensional_force(nondimensional_end_to_end_length_per_link)
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.. automethod:: helmholtz_free_energy(end_to_end_length, temperature)
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.. automethod:: helmholtz_free_energy_per_link(end_to_end_length, temperature)
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.. automethod:: relative_helmholtz_free_energy(end_to_end_length, temperature)
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.. automethod:: relative_helmholtz_free_energy_per_link(end_to_end_length, temperature)
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.. automethod:: nondimensional_helmholtz_free_energy(nondimensional_end_to_end_length_per_link, temperature)
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.. automethod:: nondimensional_helmholtz_free_energy_per_link(nondimensional_end_to_end_length_per_link, temperature)
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.. automethod:: nondimensional_relative_helmholtz_free_energy(nondimensional_end_to_end_length_per_link)
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.. automethod:: nondimensional_relative_helmholtz_free_energy_per_link(nondimensional_end_to_end_length_per_link)

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