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<h1><strong>Patent/CopyRight</strong></h1>
<h2><strong>Copyrights on major software package</strong></h2>
<ol><li>Raghava, G.P.S. (1996) ASSP: A computer program for comparision of observed and predicted protein secondary structure. L-15582/96.</li>
<li>Raghava, G.P.S. (1996) A computer program for analysing and creating protein secondary structure database. L-15658/96.</li>
<li>Raghava, G.P.S and Agrawal, P. A (1997) Software for phylogcncitic identification of microorganisms. C R. 1/97, date 11.3.97</li>
<li>Raghava, G.P.S (2001) A computer program for assisting the user in using protein modelling software package (PMOD 1.0) . SW-393/2001, date 08/02/2001</li>
<li>Kaur, H. and Raghava, G.P.S. (2002) BETATPRED: Software for predicting b -turns using statistical algorithm. SW-1162/2003</li>
<li>Raghava, G.P.S. (2002) DNASIZE: A software package for computing DNA/Protein fragments. SW-1156/2003.</li>
<li>Issac, B., Singh, H., Kaur, H. and Raghava, G.P.S. (2002) FTG: Software Package for Predicting Gene in DNA using Fast Fourier Transform. SW-1154/2003.</li>
<li>Issac, B. and Raghava, G.P.S. (2002) GWBLAST: Software Package for Genome Wide Similarity Search using BLAST. SW-1149/2003</li>
<li>Issac, B. and Raghava, G.P.S. (2002) GWFASTA: Computer program for genome wide FASTA search. SW-1143/2003.</li>
<li>Raghava, G.P.S. (2002) LibInet: Software Package for Managing Library Resources and Accessing via Internet. SW-1155/2003.</li>
<li>Singh, H. and Raghava, G.P.S. (2002) MHCB ench: Evaluation of MHC Binding Peptide Prediction Algorithms. SW-1160/2003.</li>
<li>Singh, H. and Raghava, G.P.S. (2002) MOT: Matrix Optimization Technique for identifying the MHC binding core. SW-1159/2003</li>
<li>Raghava, G.P.S. (2002) PCLASS: Computer Program for predicting structural class of protein via Internet. SW-1157/2003</li>
<li>Raghava, G.P.S. (2002) PDSB: Software Package for Managing Public Domain Software in Biology. SW-1148/2003.</li>
<li>Raghava, G.P.S. (2002) PDWSB: Software Package for creating and managing Biological Web Servers. SW-1152/2003.</li>
<li>Singh, H. and Raghava, G.P.S. (2002) ProPred: Software package for predicting promiscuous MHC class-II binding peptides. SW-1163/2003</li>
<li>Singh, H. and Raghava, G.P.S. (2002) ProPred-I: Software package for predicting promiscuous MHC Class-I binding peptides. SW-1161/2003</li>
<li>Raghava, G.P.S. (2002) PSAweb: Software package for Analyzing of Protein Sequence and Multiple Alignment. SW-1158/2003.</li>
<li>Bhasin, M. and Raghava, G. P.S. (2003) MHCBN: A software package for managing data of Immunologically related peptides. SW-1151/200</li>
<li>Bhasin, M. and Raghava, G. P.S. (2003) HLA-DR4Pred: An SVM and ANN based software for the prediction of HLA-DRB0401 binding peptides (Submitted).</li>
<li>Saha, H. Bhasin, M. and Raghava, G. P.S. (2003) Bcipep: A software package for management of B cell epitopes. SW-1851/200</li>
<li>Bhasin, M. and Raghava, G. P.S. (2002) A Webserver for Prediction of Promiscuous And High Affinity Mutated MHC Binders (Submitted).</li>
<li>Bhasin, M. and Raghava, G. P.S. (2002) TAPPred: A software package for predicting TAP binding affinity of peptides via internet. SW-1847/2005.</li>
<li>Kaur, H. and Raghava, G.P.S. (2003) AlphaPred: A software for prediction of Alpha-turns in proteins (Submitted)</li>
<li>Kaur, H. and Raghava, G.P.S. (2003) BetatPred2: A software for prediction of beta-turns in proteins from multiple alignment using neural network (Submitted).</li>
<li>Kaur, H. and Raghava, G.P.S. (2003) BetaTurns: A software for prediction of beta-turn types in proteins from evolutionary information using neural network (Submitted).</li>
<li>Kaur, H. and Raghava, G.P.S. (2003) Ar_NHPred: A software for prediction of aromatic-backbone NH interactions in proteins. SW-1850/2005.</li>
<li>Issac, B and G.P.S. Raghava (2003) SVMgene: Predicting protein coding regions in human genomic DNA using SVM. SW-1852/2005.</li>
<li>Kaur, H. and Raghava, G.P.S. (2003) CHPredict: A software for prediction of C-H...O and C-H...( interactions in proteins using recurrent neural network (Submitted).</li>
<li>Bhasin,M. and Raghava, G. P. S. (2005) Pcleavage: A SVM based Method for Prediction of Consitutive and Immuno proteasome Cleavage Sites in Antigenic Sequences. SW-1950/2005.</li>
<li>Bhasin, M. and Raghava, G. P. S. (2004) ESLpred: SVM Based Method for Subcellular Localization of Eukaryotic Proteins using Dipeptide Composition and PSI-BLAST. SW-2104/2005.</li>
<li>Bhasin, M. and Raghava, G. P. S. (2004) GPCRpred: An SVM Based Method for Prediction of families and subfamilies of G-protein coupled receptors Nucleic. SW-2108/2005.</li>
<li>Kush, A. and Raghava, G. P. S. (2008) AC2DGel: Analysis and Comparison of 2D Gels. SW-2123/2005</li>
<li>Bhasin, M. and Raghava, G. P. S.(2005) GPCRsclass : A web tool for classification of amine type of G-protein coupled Receptors. SW-1947/2005.</li>
<li>Saha, S. and Raghava, G. P. S.(2006) VICMpred: SVM-based method for the prediction of functional proteins of gram-negative bacteria using amino acid patterns and composition. SW-2287/2005.</li>
<li>Singh, H. and Raghava, G. P. S.(2007) Prediction and mapping of promiscuous MHC class II binders in an antigen sequence. SW-2286/2005</li>
<li>Saha, S. and Raghava, G. P. S. (2006) AlgPred: Prediction of allergenic proteins and mapping of IgE epitopes. SW-3013/2006.</li>
<li>Kumar, M., Thakur, V. and Raghava, G. P. S. (2008) COPid: composition based protein identification. SW-3074/2005.</li>
<li>Bhasin,M. and Raghava, G.P.S. (2004)Classification of nuclear receptors based on amino acid composition and dipeptide composition. SW-2124/2005.</li>
<li>Aarti Garg, Manoj Bhasin, and Gajendra P. S. Raghava (2005). SVM-based method for subcellular localization of human proteins using amino acid compositions, their order and similarity search. SW-2269/2005.</li>
<li>Saha, S. and Raghava, G. P. S. (2007) Prediction of neurotoxins based on their function and source.SW-2352/2005.</li>
<li>Saha, S. and Raghava, G. P. S. (2007) Prediction of bacterial proteins. SW-2652/2005.</li>
<li>Rashid M., Saha S. and Raghava, G. P. S. (2007)TBPred:A SVM based subcellular localization prediction method for Mycobacterial proteins. SW-3635/2007</li>
<li>Rakesh Kaundal and Raghava, G. P. S. RSLpred:A svm based method for subcellular localization prediction of rice proteins. SW-3638/2007.</li>
<li>Ahmed Firoz, Kumar M. and Raghava G.P.S. PolyApred: SVM based method for predicting of polyadenylation signals in human DNA sequence. SW-3637/2007.</li>
<li>Ahmed Firoz, Singh J. and Raghava G.P.S. CDpred:Prediction of cleavage site of Dicer using support vector machine. (Submitted)</li>
<li>Lata, S. and Raghava, G. P. S. (2008) PRRDB: A comprehensive database of Pattern-Recognition Receptors and their ligands (Submitted).</li>
<li>Ahmed Firoz, Ansari H.R. and Raghava G.P.S. RISCbinder:Prediction of guide strand of microRNAs from its sequence and secondary structure. (Submitted).</li>
<li>A suite of programs for computer-aided vaccine design. SW-2264/2005.</li>
<li>Ahmed Firoz, Singh J. and Raghava G.P.S. (2009) CDpred:Prediction of cleavage site of Dicer using support vector machine. (SW-4017/2009).</li>
<li>Lata, S. and Raghava, G. P. S. (2009) PRRDB: A comprehensive database of Pattern-Recognition Receptors and their ligands (SW-4018/2009).</li>
<li>Ahmed, F., Ansari, H.R. And Raghava, G.P.S (2009)Prediction of guide strand of microRNAs from its sequence and seconure (RISC binder in Short) (SW-4193/2009).</li>
<li>Panwar, B. And Raghava, G.P.S (2010) Prediction and classification of Aminoacyl tNRA syntheases using signature profile-based descriptors (SW-4633/2010).</li>
<li>Ansari, H.R. And Raghava, G.P.S (2010) Identification of NAD interacting residues in proteins (SW-4637/2010).</li>
<li>Chauhan, J.S. , Mishra, N.K. And Raghava, G.P.S (2010) GTPBinder: A web based tool for prediction of GTP binding residue in protein sequence (SW-4638/2010).</li>
<li>Rashid, M and Raghava, G.P.S (2010) MycoPrint: Prediction of protein-protein interaction in Mycobacterium tuberculosis (SW-4635/2010).</li>
<li>Mishra, N.K and Raghava, G.P.S (2010) FADPred: Prediction of FAD interacting amino acid residue using evolutionary information and SVM (SW-4639/2010)</li>
<li>Chauhan, J.S., Mishra, N.K. And Raghava, G.P.S (2010) ATPrint: Prediction of ATP interacting amino acidacterium tuberculosis (SW-4635/2010).</li>
<li>Kumar, S. And Raghava, G.P.S : GenomeABC: A platform for benchmarking of genome assemblers (CR No. 035CR2011).</li>
<li>Sharma, A. , Singla, D. , Rashid M and Raghava, G.P.S (2011) DESTAMP: Designing of stable antibacterial mutant peptides (CR No. 036CR2011).</li>
<li>Mishra, N.K, Singla, D. , Agarwal, S. And Raghava G.P.S (2011) ToxiPred: A server for prediction of aqueous toxicity of small chemical molecules in T. Pyri(2011)</li>
<li>Ansari, H.R., Agarwal, S. And Raghava, G.P.S (2011) NPTOPE for the prediction of non-peptide epitopes using QSAR based Random Forest model (CR No. 013CR2010).</li>
<li>Agarwal, S, Mishra, N.K and Raghava, G.P.S (2011) PreMieR: Prediction of Mannose Interacting Residues (CR No. 011CR2010).</li>
<li>Rahman, H and Raghava G.P.S (2011) CBTOPE for the identification of conformational B-cell Epitopes in an antigen from its primary sequence. (CR No. 016CR2010 ).</li>
<li>Singh, H. , Agarwal, S. , Ansari, H.R and Raghava, G.P.S (2011) SfePred: Prediction of the year of evolution of swine flu (CR No. 005CR2010).</li>
<li>Panwar, B. And Raghava, G.P.S (2011) Discrimination between cytosolic and mitocondrial tRNA synthetases (CR No. 039CR2010).</li>
<li>Sharma, A, Singla, D., Rashid, M. and Raghava, G.P.S. (2011) “DESTAMP: Designing of stable antibacterial mutant peptides (Applied).</li>
<li>Ansari, H.R., Singla, D., Raghava, G.P.S. (2011) TLR4hi- a software for computing antagonist of human TLR4<9d>.</li>
<li>Panwar,B., Gupta, S., and Raghava, G.P.S. ( Raghava, G.P.S. (2012) “Drugmint: Knowledge based approach for predicting drug-likeness of a molecule (Applied).</li>
<li>Singh, H., Ansari, H.R. and Raghava, G.P.S. (2012) "LBtope: Improved method for linear B-cell epitope prediction using antigen’s primary sequence (Applied).</li>
<li>Dhanda, S.,K., Singla, D., Mondal, A.,K. and Raghava, G.P.S. (2012) “Drugmint: Knowledge based approach for predicting drug-likeness of a molecule (Applied)</li>
<li>Chhauhan, J.,S., Bhat, A.,H., Rao, A. and Raghava, G.P.S. (2012) “GlycoPP: A Webserver for Prediction of N- O-Glycosites in Prokaryotic Protein Sequences (Applied).</li>
<li>Singh, H., Singh, S., and Raghava, G.P.S. (2013) PEP2D: Bayesian based approach for predicting secondary structure of peptides using evolutionary information (Applied).</li>
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