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pinin4fjordsclaude
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Remove hardcoded --platform=linux/amd64 from test configs
The platform flag was forcing AMD64 emulation even on ARM runners, causing Docker to fail when pulling ARM images. The -u flag for fixing chown issues is retained. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <[email protected]>
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modules/local/star_align_igenomes/tests/nextflow.arriba.config

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@@ -11,4 +11,4 @@ process {
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}
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// Fix chown issue for the output star folder
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docker.runOptions = '--platform=linux/amd64 -u $(id -u):$(id -g)'
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docker.runOptions = '-u $(id -u):$(id -g)'

modules/local/star_align_igenomes/tests/nextflow.config

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@@ -11,4 +11,4 @@ process {
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}
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// Fix chown issue for the output star folder
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docker.runOptions = '--platform=linux/amd64 -u $(id -u):$(id -g)'
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docker.runOptions = '-u $(id -u):$(id -g)'

modules/local/star_align_igenomes/tests/nextflow.starfusion.config

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@@ -11,4 +11,4 @@ process {
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}
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// Fix chown issue for the output star folder
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docker.runOptions = '--platform=linux/amd64 -u $(id -u):$(id -g)'
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docker.runOptions = '-u $(id -u):$(id -g)'

subworkflows/local/align_star/tests/nextflow.config

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@@ -9,7 +9,7 @@ process {
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}
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// Fix chown issue for the output star folder
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docker.runOptions = '--platform=linux/amd64 -u $(id -u):$(id -g)'
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docker.runOptions = '-u $(id -u):$(id -g)'
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// NOTE This is how pipeline users will use Sentieon in real world use
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if (System.getenv('SENTIEON_LICSRVR_IP')) {

subworkflows/local/prepare_genome/tests/nextflow.config

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}
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// Fix chown issue for the output star folder
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docker.runOptions = '--platform=linux/amd64 -u $(id -u):$(id -g)'
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docker.runOptions = '-u $(id -u):$(id -g)'
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// NOTE This is how pipeline users will use Sentieon in real world use
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if (System.getenv('SENTIEON_LICSRVR_IP')) {

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