Skip to content

Commit 2516a34

Browse files
committed
chore: Copy over conda skips
a004c86 2da71b7
1 parent 0d9e76f commit 2516a34

File tree

1 file changed

+12
-0
lines changed

1 file changed

+12
-0
lines changed

.github/conda_skip.yml

Lines changed: 12 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -45,6 +45,14 @@
4545
# path: modules/nf-core/deepcell/mesmer
4646
# - profile: conda
4747
# path: modules/nf-core/deepvariant
48+
- profile: conda
49+
path: modules/nf-core/deepvariant/callvariants
50+
- profile: conda
51+
path: modules/nf-core/deepvariant/makeexamples
52+
- profile: conda
53+
path: modules/nf-core/deepvariant/postprocessvariants
54+
- profile: conda
55+
path: modules/nf-core/deepvariant/rundeepvariant
4856
# - profile: conda
4957
# path: modules/nf-core/ensemblvep/vep
5058
# - profile: conda
@@ -97,6 +105,8 @@
97105
# path: modules/nf-core/sentieon/bwaindex
98106
# - profile: conda
99107
# path: modules/nf-core/sentieon/bwamem
108+
- profile: conda
109+
path: modules/nf-core/sentieon/datametrics
100110
# - profile: conda
101111
# path: modules/nf-core/sentieon/dedup
102112
# - profile: conda
@@ -127,6 +137,8 @@
127137
# path: subworkflows/nf-core/vcf_annotate_ensemblvep
128138
# - profile: conda
129139
# path: subworkflows/nf-core/bcl_demultiplex
140+
- profile: conda
141+
path: subworkflows/nf-core/deepvariant
130142
# - profile: conda
131143
# path: subworkflows/nf-core/fastq_align_bamcmp_bwa
132144
# - profile: conda

0 commit comments

Comments
 (0)