diff --git a/Dockerfile b/Dockerfile
index 6899ae7..f58db32 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -4,7 +4,7 @@
 # _|_| \|||_| \|  ||_|_/_|_/--\||_ _|_|  |/--\\_||_
 ###############################################################################################
 
-FROM murphylab/matlabmcr2018b-jupyter as intermediate
+FROM murphylab/matlabmcr2018b-jupyter:18.04 as intermediate
 
 ###############################################################################################
 # INSTALL BFTOOLS
@@ -24,8 +24,8 @@ RUN echo "Downloading CellOrganizer v2.8.0" && \
 	wget -nc --quiet http://www.cellorganizer.org/Downloads/v2.8.0/docker/cellorganizer-binaries-matlabmcr2018b.tgz && \
 	tar -xvf cellorganizer-binaries-matlabmcr2018b.tgz && \
 	rm cellorganizer-binaries-matlabmcr2018b.tgz && \
-	mv cellorganizer-binaries /opt
-
+        mv cellorganizer-binaries /opt
+COPY tiff2ometiff /opt/cellorganizer-binaries
 RUN mkdir /home/murphylab/cellorganizer-python && mkdir /home/murphylab/cellorganizer
 COPY cellorganizer-python /home/murphylab/cellorganizer-python
 ###############################################################################################
@@ -55,7 +55,7 @@ COPY files /home/murphylab/cellorganizer
 ###############################################################################################
 # COPY CELLORGANIZER LOGO TO JUPYTER NOTEBOOK
 RUN wget --quiet -nc http://www.cellorganizer.org/Downloads/v2.8.0/docker/logo.png && \
-	mv -v logo.png /opt/conda/lib/python3.6/site-packages/notebook/static/base/images
+	mv -v logo.png /opt/conda/lib/python3.7/site-packages/notebook/static/base/images
 ###############################################################################################
 
 ###############################################################################################
@@ -65,7 +65,7 @@ RUN wget --quiet -nc http://www.cellorganizer.org/Downloads/v2.8.0/docker/logo.p
 #
 ###############################################################################################
 
-FROM murphylab/matlabmcr2018b-jupyter
+FROM murphylab/matlabmcr2018b-jupyter:18.04
 
 ###############################################################################################
 MAINTAINER Ivan E. Cao-Berg <icaoberg@andrew.cmu.edu>
@@ -92,11 +92,13 @@ RUN	chmod +x /opt/cellorganizer-binaries/img2slml && \
 	chmod +x /opt/cellorganizer-binaries/slml2report && \
 	chmod +x /opt/cellorganizer-binaries/slml2info && \
 	chmod +x /opt/cellorganizer-binaries/slml2slml && \
+	chmod +x /opt/cellorganizer-binaries/tiff2ometiff && \
 	ln -s /opt/cellorganizer-binaries/img2slml /usr/local/bin/img2slml && \
 	ln -s /opt/cellorganizer-binaries/slml2img /usr/local/bin/slml2img && \
 	ln -s /opt/cellorganizer-binaries/slml2report /usr/local/bin/slml2report && \
 	ln -s /opt/cellorganizer-binaries/slml2info /usr/local/bin/slml2info && \
-	ln -s /opt/cellorganizer-binaries/slml2slml /usr/local/bin/slml2slml
+	ln -s /opt/cellorganizer-binaries/slml2slml /usr/local/bin/slml2slml && \
+	ln -s /opt/cellorganizer-binaries/tiff2ometiff /usr/local/bin/tiff2ometiff
 
 # COPY HOME DIRECTORY FROM INTERMEDIATE TO FINAL IMAGE
 COPY --from=intermediate /home/murphylab /home/murphylab
@@ -107,7 +109,12 @@ RUN cd /home/murphylab/cellorganizer-python && python setup.py install
 RUN rm -rf /home/murphylab/cellorganizer-python
 
 # MOVE LOGO FROM INTERMEDIATE TO FINAL IMAGE
-COPY --from=intermediate /opt/conda/lib/python3.6/site-packages/notebook/static/base/images/logo.png /opt/conda/lib/python3.6/site-packages/notebook/static/base/images/logo.png
+COPY --from=intermediate /opt/conda/lib/python3.7/site-packages/notebook/static/base/images/logo.png /opt/conda/lib/python3.7/site-packages/notebook/static/base/images/logo.png
+
+# Install Extensions
+RUN conda install -c conda-forge jupyter_contrib_nbextensions
+RUN jupyter nbextension enable hide_input_all/main
+RUN jupyter nbextension enable init_cell/main
 ###############################################################################################
 
 ##############################################################################################\
diff --git a/build.sh b/build.sh
index dab7503..4d0ca7f 100644
--- a/build.sh
+++ b/build.sh
@@ -5,5 +5,5 @@ git submodule update
 cd cellorganizer-python
 git checkout master
 cd ..
-docker build --no-cache -t $(whoami)/cellorganizer-jupyter .
+docker build -t $(whoami)/cellorganizer-jupyter .
 
diff --git a/cellorganizer-python b/cellorganizer-python
index 2bf604f..55ce2f7 160000
--- a/cellorganizer-python
+++ b/cellorganizer-python
@@ -1 +1 @@
-Subproject commit 2bf604f805ed370bf6adca071f6475e18151957d
+Subproject commit 55ce2f752a3d66a80af90f4786e757948caa1fb2
diff --git a/run.sh b/run.sh
index dabb737..bcf3df1 100644
--- a/run.sh
+++ b/run.sh
@@ -1,3 +1,21 @@
 #!/bin/bash
 
-docker run --rm -p 8888:8888 -e JUPYTER_LAB_ENABLE=yes murphylab/cellorganizer-jupyter
+if [ ! -d data ]; then
+	mkdir -p data/images
+	cd data/images
+	wget -nc http://murphylab.web.cmu.edu/data/TcellModels/LATFull.tgz
+	tar -xvf LATFull.tgz
+	rm -fv LATFull.tgz
+
+	wget -nc http://murphylab.web.cmu.edu/data/Hela/3D/multitiff/cellorganizer_full_image_collection.zip
+	unzip cellorganizer_full_image_collection.zip
+	rm -fv cellorganizer_full_image_collection.zip
+	cd ../..
+fi
+
+docker run --rm -p 8888:8888 \
+	-v $(pwd)/data:/home/murphylab/cellorganizer/local \
+	--memory="8g" \
+	--cpus=2 \
+	-e JUPYTER_LAB_ENABLE=yes \
+	murphylab/cellorganizer-jupyter