togovar-tgvid_numbering

tgvid numbering and output of vcf files

Installation

$ docker build --tag togovar-tgvid_numbering .
$ docker run -itd --name togovar-tgvid_numbering -v $(pwd)/numbering/:/root/numbering_tgvid/ togovar-tgvid_numbering

Excution

• start virtuoso

$ docker exec togovar-tgvid_numbering sh start_virtuoso.sh

• delete and load ttl data

place ttl files in "$(pwd)/numbering/input/load/"

$ docker exec togovar-tgvid_numbering sh all_delete_ad_load.sh

• tgvid numbering

place vcf files in "$(pwd)/numbering/input/vcf/"

$ docker exec togovar-tgvid_numbering sh numbering.sh

tsv files is output to "$(pwd)/numbering/output/"

• only output tsv files

$ docker exec togovar-tgvid_numbering sh output_tgvid.sh

tsv files is output to "$(pwd)/numbering/output"

if you want to specify offset, you can specify 100,000 units as an argument. example)

$ docker exec togovar-tgvid_numbering sh output_tgvid.sh 100000