Update dependencies to the latest versions

Author: dean0x7d

.github/workflows/test_package.yml

@@ -7,7 +7,7 @@ jobs:
       fail-fast: false
       matrix:
         os: [windows-latest, ubuntu-latest, macos-latest]
-        embedded-py: [3.11.5, 3.12.4]
+        embedded-py: [3.11.5, 3.12.10]
     name: "${{ matrix.os }}, ${{ matrix.embedded-py }}"
     env:
       create_pck: conan create . -o embedded_python-core/*:version=${{ matrix.embedded-py }} --build=missing --user=lumicks --channel=testing

changelog.md

@@ -3,6 +3,7 @@
 ## v1.10.0 | TBD
 
 - Switched from `pip-licenses` to `pip-licenses-cli` since the former doesn't seem to be maintained anymore and is falling behind on compatibility. See https://github.com/raimon49/pip-licenses/issues/227
+- Updated default recipe options to `pip` v25.1.1, `setuptools` v80.9.0, and `wheel` v0.45.1.
 - Dropped support for Conan v1.
 
 ## v1.9.1 | 2024-06-17

conanfile.py

@@ -26,10 +26,10 @@ class EmbeddedPython(ConanFile):
     }
     default_options = {
         "packages": None,
-        "pip_version": "24.0",
+        "pip_version": "25.1.1",
         "pip_licenses_version": "1.4.0",
-        "setuptools_version": "69.5.1",
-        "wheel_version": "0.43.0",
+        "setuptools_version": "80.9.0",
+        "wheel_version": "0.45.1",
     }
     exports_sources = "embedded_python.cmake"
 

core/conanfile.py

@@ -52,13 +52,13 @@ def requirements(self):
         if self.settings.os == "Windows":
             return  # on Windows, we download a binary, so we don't need anything else
 
-        self.requires("sqlite3/3.45.3")
+        self.requires("sqlite3/3.49.1")
         self.requires("bzip2/1.0.8")
         self.requires("xz_utils/5.4.5")
         self.requires("zlib/[>=1.2.11 <2]")
         self.requires("openssl/[>=3 <4]")
         if self.settings.os == "Linux":
-            self.requires("libffi/3.4.4")
+            self.requires("libffi/3.4.8")
             self.requires("libuuid/1.0.3")
             self.requires("mpdecimal/2.5.1")
 

license.md

@@ -1,4 +1,4 @@
-Copyright (c) 2021, LUMICKS B.V.
+Copyright (c) 2025, LUMICKS B.V.
 
 Apache License, Version 2.0, January 2004, http://www.apache.org/licenses/
 

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.black]
 line-length = 100
-target-version = ['py311']
+target-version = ['py312']
 extend-exclude = '''
 (
   /(

test_package/nbconvert/requirements.txt

@@ -1 +1 @@
-nbconvert==7.16.4
+nbconvert==7.16.6

test_package/numpy/requirements.txt

@@ -1,5 +1,5 @@
-hypothesis==6.103.1
-numpy==1.26.4
-pytest-xdist==3.6.1
-pytest==8.2.2
-typing-extensions==4.12.2
+hypothesis==6.136.2
+numpy==2.3.1
+pytest-xdist==3.8.0
+pytest==8.4.1
+typing-extensions==4.14.1

test_package/numpy/test.py

@@ -1,13 +1,27 @@
 """`numpy` distributes its tests: run them"""
 
+import os
+import pathlib
 import sys
 import numpy as np
 
-# `test_mem_policy.py` and `f2py/*` tests fail with Python 3.11 due to `numpy.distutils`
-# deprecations and issues with the latest `setuptools`. Ignore it until it's resolves in `numpy`.
-sys.exit(
-    not np.test(
-        verbose=2,
-        extra_argv=["-n", "auto", "-k=not test_mem_policy and not f2py"],
-    )
-)
+# `--ignore-glob` expands patterns as absolute paths in the current folder
+os.chdir(pathlib.Path.home())
+
+skip_tests = [
+    "test_mem_policy",  # requires `meson`
+    "test_configtool",  # `numpy-config` is not on PATH in the embedded env
+]
+
+if sys.version_info < (3, 12):
+    skip_tests += ["test_public_api"]  # fails with Python 3.11 due to `numpy.distutils`
+
+pytest_args = [
+    "-n=auto",
+    "-k=" + " and ".join([f"not {x}" for x in skip_tests]),
+    # `f2py` requires `meson` and the tests are very slow so we want to skip them. They must be
+    # excluded with `ignore-glob` to avoid even collecting them because of import errors.
+    "--ignore-glob=*f2py*",
+]
+
+sys.exit(not np.test(verbose=2, extra_argv=pytest_args))

test_package/pylake/requirements.txt

@@ -1,2 +1,2 @@
-lumicks.pylake[notebook] @ git+https://github.com/lumicks/pylake@86d6a6bd2d2acf5463869d74e69d2a34b0e962c2
-    # Equivalent to pylake 1.5.1 but using a specific commit to validate the functionality
+lumicks.pylake[notebook] @ git+https://github.com/lumicks/pylake@a149f57d6a97ad0140ad514a71e28aeb9921b857
+    # Equivalent to pylake 1.6.2 but using a specific commit to validate the functionality