diff --git a/Manifest.toml b/Manifest.toml index 9b02b58f141..987e40a406b 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -38,9 +38,9 @@ version = "2.11.0" [[ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "6f6e33efac70fc24c1f2a654a090b7af01690ffe" +git-tree-sha1 = "951c3fc1ff93497c88fb1dfa893f4de55d0b38e3" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "0.3.7" +version = "0.3.8" [[Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" @@ -76,9 +76,9 @@ version = "0.1.6" [[CUDA]] deps = ["AbstractFFTs", "Adapt", "BinaryProvider", "CEnum", "DataStructures", "ExprTools", "GPUArrays", "GPUCompiler", "LLVM", "Libdl", "LinearAlgebra", "Logging", "MacroTools", "NNlib", "Pkg", "Printf", "Random", "Reexport", "Requires", "SparseArrays", "Statistics", "TimerOutputs"] -git-tree-sha1 = "66dbcc0d8e9470358d57aa52dbe74f97bab31a7f" +git-tree-sha1 = "2c007bb3931360013d32bcd53a727e0a7f144e00" uuid = "052768ef-5323-5732-b1bb-66c8b64840ba" -version = "1.2.0" +version = "1.2.1" [[Cassette]] git-tree-sha1 = "ff6f5109371926beb67ec3101be17d2c211e497d" @@ -163,9 +163,9 @@ version = "1.3.0" [[DataStructures]] deps = ["InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "edad9434967fdc0a2631a65d902228400642120c" +git-tree-sha1 = "88d48e133e6d3dd68183309877eac74393daa7eb" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.17.19" +version = "0.17.20" [[Dates]] deps = ["Printf"] @@ -183,9 +183,9 @@ version = "0.4.2" [[DiffEqBase]] deps = ["ArrayInterface", "ChainRulesCore", "ConsoleProgressMonitor", "DataStructures", "Distributed", "DocStringExtensions", "FunctionWrappers", "IterativeSolvers", "IteratorInterfaceExtensions", "LabelledArrays", "LinearAlgebra", "Logging", "LoggingExtras", "MuladdMacro", "Parameters", "Printf", "ProgressLogging", "RecipesBase", "RecursiveArrayTools", "RecursiveFactorization", "Requires", "Roots", "SparseArrays", "StaticArrays", "Statistics", "SuiteSparse", "TableTraits", "TerminalLoggers", "TreeViews", "ZygoteRules"] -git-tree-sha1 = "71f24ebaae27509a39b8a1aabe313351eebe54ed" +git-tree-sha1 = "36c8c104041c4c45832ce26e95922a0be0371249" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.41.2" +version = "6.42.0" [[DiffResults]] deps = ["StaticArrays"] @@ -211,9 +211,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "536ae0f40b0f6ed8cf5300f491a243fcf88b5ae4" +git-tree-sha1 = "9c41285c57c6e0d73a21ed4b65f6eec34805f937" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.23.6" +version = "0.23.8" [[DocStringExtensions]] deps = ["LibGit2", "Markdown", "Pkg", "Test"] @@ -244,6 +244,11 @@ git-tree-sha1 = "0fa3b52a04a4e210aeb1626def9c90df3ae65268" uuid = "8f5d6c58-4d21-5cfd-889c-e3ad7ee6a615" version = "1.1.0" +[[FastClosures]] +git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" +uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" +version = "0.3.2" + [[FileIO]] deps = ["Pkg"] git-tree-sha1 = "f354b2087a3b01c1d7152c19f45886c8a036fa5e" @@ -252,15 +257,15 @@ version = "1.4.0" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays"] -git-tree-sha1 = "be4180bdb27a11188d694ee3773122f4921f1a62" +git-tree-sha1 = "4863cbb7910079369e258dee4add9d06ead5063a" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.8.13" +version = "0.8.14" [[FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Requires", "SparseArrays", "StaticArrays"] -git-tree-sha1 = "43b397bf66d07d113cc2cc012dd2029d336c3894" +git-tree-sha1 = "ed5d92cc9a84b9f5f9d65d3559b22d4b3b824b7e" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.5.1" +version = "2.5.2" [[Formatting]] deps = ["Printf"] @@ -281,9 +286,9 @@ version = "1.1.1" [[GPUArrays]] deps = ["AbstractFFTs", "Adapt", "LinearAlgebra", "Printf", "Random", "Serialization"] -git-tree-sha1 = "0aaa4ff7001086e190a00180495b93b00df8bb43" +git-tree-sha1 = "9027d6128645d227fa9ba7d5b3aa00af696b9aaf" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "4.0.1" +version = "5.0.0" [[GPUCompiler]] deps = ["DataStructures", "InteractiveUtils", "LLVM", "Libdl", "TimerOutputs", "UUIDs"] @@ -332,9 +337,9 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[Intervals]] deps = ["Dates", "Printf", "RecipesBase", "Serialization", "TimeZones"] -git-tree-sha1 = "f8fd8065b6bccfbc2f9e7dd1fa5c0dde81d09185" +git-tree-sha1 = "9da845579d1dce4ce5118008c3fe6df17260bb46" uuid = "d8418881-c3e1-53bb-8760-2df7ec849ed5" -version = "1.4.1" +version = "1.4.2" [[IterativeSolvers]] deps = ["LinearAlgebra", "Printf", "Random", "RecipesBase", "SparseArrays"] @@ -384,9 +389,9 @@ version = "0.4.5" [[LazyArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "MatrixFactorizations", "StaticArrays"] -git-tree-sha1 = "b8ae23618bb217f8ec300dafac8422293abc1620" +git-tree-sha1 = "e0b604d3b6da2a6e9e91c6cf928f79d2092619f3" uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "0.16.15" +version = "0.16.16" [[LeftChildRightSiblingTrees]] deps = ["AbstractTrees"] @@ -431,9 +436,9 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[Literate]] deps = ["Base64", "JSON", "REPL"] -git-tree-sha1 = "422133037d6dc5df9f9b97c2cb81fcd9e35ddffe" +git-tree-sha1 = "7b32a23ef47295ac3bfe66b12718e9535f466dc7" uuid = "98b081ad-f1c9-55d3-8b20-4c87d4299306" -version = "2.5.0" +version = "2.5.1" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -446,15 +451,15 @@ version = "0.4.2" [[LoopVectorization]] deps = ["DocStringExtensions", "LinearAlgebra", "OffsetArrays", "SIMDPirates", "SLEEFPirates", "UnPack", "VectorizationBase"] -git-tree-sha1 = "25b1363081880dcd6a9e27736f4b1951ea4b8933" +git-tree-sha1 = "5d1d5fb3e9a4c18ae1aa8cb16b0fbdbfeb7db5ed" uuid = "bdcacae8-1622-11e9-2a5c-532679323890" -version = "0.8.20" +version = "0.8.22" [[MPI]] deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "Pkg", "Random", "Requires", "Serialization", "Sockets"] -git-tree-sha1 = "925f4e00b51d7a68ecb88c1b60d3b7aefb8c8fcb" +git-tree-sha1 = "0bd36605eea7a4d9c3ae0d7f21c10210dd54cb83" uuid = "da04e1cc-30fd-572f-bb4f-1f8673147195" -version = "0.15.0" +version = "0.15.1" [[MPICH_jll]] deps = ["CompilerSupportLibraries_jll", "Libdl", "Pkg"] @@ -474,9 +479,9 @@ uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[MatrixFactorizations]] deps = ["ArrayLayouts", "LinearAlgebra", "Random"] -git-tree-sha1 = "9ebb16ae3c1cc772a3461741fc666c4a23e80bb1" +git-tree-sha1 = "f609fbed57eede4fd9c8529f59b3d30454f9e5ca" uuid = "a3b82374-2e81-5b9e-98ce-41277c0e4c87" -version = "0.5.1" +version = "0.5.2" [[MbedTLS]] deps = ["Dates", "MbedTLS_jll", "Random", "Sockets"] @@ -518,15 +523,15 @@ version = "0.2.2" [[NCDatasets]] deps = ["BinDeps", "CFTime", "CondaBinDeps", "DataStructures", "Dates", "Libdl", "Printf"] -git-tree-sha1 = "271e4670a6b30ec1e5daf6ba8b30240b7d85f535" +git-tree-sha1 = "25de2b6a884672b7790a0abb0b28f02f7ab78369" uuid = "85f8d34a-cbdd-5861-8df4-14fed0d494ab" -version = "0.10.2" +version = "0.10.3" [[NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] -git-tree-sha1 = "7c4e66c47848562003250f28b579c584e55becc0" +git-tree-sha1 = "ae1cbe7f1de1c443f44a5a3404140f11fe0d2610" uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" -version = "7.6.1" +version = "7.6.2" [[NLsolve]] deps = ["Distances", "LineSearches", "LinearAlgebra", "NLSolversBase", "Printf", "Reexport"] @@ -534,17 +539,11 @@ git-tree-sha1 = "ea172c86745810136d744fc67650d2e2de669c4f" uuid = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" version = "4.4.0" -[[NNPACK_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "c3d1a616362645754b18e12dbba96ec311b0867f" -uuid = "a6bfbf70-4841-5cb9-aa18-3a8ad3c413ee" -version = "2018.6.22+0" - [[NNlib]] -deps = ["Libdl", "LinearAlgebra", "LoopVectorization", "NNPACK_jll", "Pkg", "Requires", "Statistics"] -git-tree-sha1 = "1d8128735fdf3ab1643dd8bc9499e4b34ccb718d" +deps = ["Libdl", "LinearAlgebra", "Pkg", "Requires", "Statistics"] +git-tree-sha1 = "8ec4693a5422f0b064ce324f59351f24aa474893" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.7.3" +version = "0.7.4" [[NaNMath]] git-tree-sha1 = "c84c576296d0e2fbb3fc134d3e09086b3ea617cd" @@ -574,10 +573,10 @@ uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.3.0" [[OrdinaryDiffEq]] -deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "ExponentialUtilities", "FiniteDiff", "ForwardDiff", "GenericSVD", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "NLsolve", "RecursiveArrayTools", "Reexport", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] -git-tree-sha1 = "b3e9e9a0bdd8e0ac3703e8c4be3cb504d1ebd312" +deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "ExponentialUtilities", "FastClosures", "FiniteDiff", "ForwardDiff", "GenericSVD", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "NLsolve", "RecursiveArrayTools", "Reexport", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] +git-tree-sha1 = "4a804dd0678fd9dda073faae523fd2d07179b56c" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "5.42.0" +version = "5.42.1" [[PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse", "Test"] @@ -599,9 +598,9 @@ version = "0.12.1" [[Parsers]] deps = ["Dates", "Test"] -git-tree-sha1 = "10134f2ee0b1978ae7752c41306e131a684e1f06" +git-tree-sha1 = "8077624b3c450b15c087944363606a6ba12f925e" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "1.0.7" +version = "1.0.10" [[Pkg]] deps = ["Dates", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "UUIDs"] @@ -698,18 +697,18 @@ version = "0.2.0" [[Roots]] deps = ["Printf"] -git-tree-sha1 = "069e68c2173b4e4d0c37ffb3268d37f168ad719c" +git-tree-sha1 = "1211c7c1928c1ed29cdcef65979b7a791e3b9fbe" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "1.0.4" +version = "1.0.5" [[SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SIMDPirates]] deps = ["VectorizationBase"] -git-tree-sha1 = "19880eef12759d7d049516fcb11f1ed8440963d6" +git-tree-sha1 = "884df77ee290b45bcf9d2edcdb186afaf1281c39" uuid = "21efa798-c60a-11e8-04d3-e1a92915a26a" -version = "0.8.21" +version = "0.8.23" [[SLEEFPirates]] deps = ["Libdl", "SIMDPirates", "VectorizationBase"] @@ -810,9 +809,9 @@ version = "1.0.1" [[TimeZones]] deps = ["Dates", "EzXML", "Mocking", "Pkg", "Printf", "RecipesBase", "Serialization", "Unicode"] -git-tree-sha1 = "1038a97206e7696ba106f2c2dafa2e9cca393269" +git-tree-sha1 = "338ddbb2b9b50a9a423ba6c3fad1824553535988" uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53" -version = "1.3.1" +version = "1.3.2" [[TimerOutputs]] deps = ["Printf"] @@ -852,9 +851,9 @@ uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" [[VectorizationBase]] deps = ["CpuId", "Libdl", "LinearAlgebra"] -git-tree-sha1 = "46afc4dc02f534e149149173f38f8f59cc23c165" +git-tree-sha1 = "09a4d4896aac75199b332eb26a8d0a9e4655e34a" uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" -version = "0.12.29" +version = "0.12.30" [[VersionParsing]] git-tree-sha1 = "80229be1f670524750d905f8fc8148e5a8c4537f" @@ -869,9 +868,9 @@ version = "0.1.2" [[WriteVTK]] deps = ["Base64", "CodecZlib", "FillArrays", "LightXML", "Random", "TranscodingStreams"] -git-tree-sha1 = "deb18aae386ed5a973bbf2e4e10a990caed9a531" +git-tree-sha1 = "1bce1d59eacda27e6a2ae7839b880dde579ad8cc" uuid = "64499a7a-5c06-52f2-abe2-ccb03c286192" -version = "1.7.2" +version = "1.7.3" [[XML2_jll]] deps = ["Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"] @@ -881,9 +880,9 @@ version = "2.9.10+1" [[Zlib_jll]] deps = ["Libdl", "Pkg"] -git-tree-sha1 = "622d8b6dc0c7e8029f17127703de9819134d1b71" +git-tree-sha1 = "d5bba6485811931e4b8958e2d7ca3738273ac468" uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.11+14" +version = "1.2.11+15" [[ZygoteRules]] deps = ["MacroTools"] diff --git a/Project.toml b/Project.toml index cdae98cf1fa..9224ab82ee4 100644 --- a/Project.toml +++ b/Project.toml @@ -51,6 +51,7 @@ CLIMAParameters = "= 0.1.6" CUDA = "1.2" Combinatorics = "1.0" Coverage = "1.0" +DiffEqBase = "6.42" Distributions = "0.22, 0.23" DocStringExtensions = "0.8" DoubleFloats = "1.1" diff --git a/docs/Manifest.toml b/docs/Manifest.toml index 2e57d337b58..ae92f338826 100644 --- a/docs/Manifest.toml +++ b/docs/Manifest.toml @@ -38,9 +38,9 @@ version = "2.11.0" [[ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "6f6e33efac70fc24c1f2a654a090b7af01690ffe" +git-tree-sha1 = "951c3fc1ff93497c88fb1dfa893f4de55d0b38e3" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "0.3.7" +version = "0.3.8" [[Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" @@ -59,9 +59,9 @@ version = "0.5.10" [[Bzip2_jll]] deps = ["Libdl", "Pkg"] -git-tree-sha1 = "3663bfffede2ef41358b6fc2e1d8a6d50b3c3904" +git-tree-sha1 = "5ccb0770e3d1c185a52e6d36e3ffb830639ed3d2" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.6+2" +version = "1.0.6+3" [[CEnum]] git-tree-sha1 = "215a9aa4a1f23fbd05b92769fdd62559488d70e9" @@ -82,9 +82,9 @@ version = "0.1.6" [[CUDA]] deps = ["AbstractFFTs", "Adapt", "BinaryProvider", "CEnum", "DataStructures", "ExprTools", "GPUArrays", "GPUCompiler", "LLVM", "Libdl", "LinearAlgebra", "Logging", "MacroTools", "NNlib", "Pkg", "Printf", "Random", "Reexport", "Requires", "SparseArrays", "Statistics", "TimerOutputs"] -git-tree-sha1 = "66dbcc0d8e9470358d57aa52dbe74f97bab31a7f" +git-tree-sha1 = "2c007bb3931360013d32bcd53a727e0a7f144e00" uuid = "052768ef-5323-5732-b1bb-66c8b64840ba" -version = "1.2.0" +version = "1.2.1" [[Cassette]] git-tree-sha1 = "ff6f5109371926beb67ec3101be17d2c211e497d" @@ -123,9 +123,9 @@ version = "3.9.0" [[ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "efec1b9e082d98d24c99f243abafb4653fb960d6" +git-tree-sha1 = "607c0ea16cb32af49ea2976f90c0c5acbca37d21" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.10.7" +version = "0.10.8" [[Colors]] deps = ["ColorTypes", "FixedPointNumbers", "InteractiveUtils", "Reexport"] @@ -205,15 +205,15 @@ version = "1.3.0" [[DataFrames]] deps = ["CategoricalArrays", "Compat", "DataAPI", "Future", "InvertedIndices", "IteratorInterfaceExtensions", "Missings", "PooledArrays", "Printf", "REPL", "Reexport", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "7721fa8c42ccb8f1ea7f99f6c2e94686892dd3b7" +git-tree-sha1 = "4fe99dbfb5201c5766d20d32a65209434347fd58" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "0.21.5" +version = "0.21.6" [[DataStructures]] deps = ["InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "edad9434967fdc0a2631a65d902228400642120c" +git-tree-sha1 = "88d48e133e6d3dd68183309877eac74393daa7eb" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.17.19" +version = "0.17.20" [[DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -236,9 +236,9 @@ version = "0.4.2" [[DiffEqBase]] deps = ["ArrayInterface", "ChainRulesCore", "ConsoleProgressMonitor", "DataStructures", "Distributed", "DocStringExtensions", "FunctionWrappers", "IterativeSolvers", "IteratorInterfaceExtensions", "LabelledArrays", "LinearAlgebra", "Logging", "LoggingExtras", "MuladdMacro", "Parameters", "Printf", "ProgressLogging", "RecipesBase", "RecursiveArrayTools", "RecursiveFactorization", "Requires", "Roots", "SparseArrays", "StaticArrays", "Statistics", "SuiteSparse", "TableTraits", "TerminalLoggers", "TreeViews", "ZygoteRules"] -git-tree-sha1 = "71f24ebaae27509a39b8a1aabe313351eebe54ed" +git-tree-sha1 = "36c8c104041c4c45832ce26e95922a0be0371249" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.41.2" +version = "6.42.0" [[DiffResults]] deps = ["StaticArrays"] @@ -264,9 +264,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "536ae0f40b0f6ed8cf5300f491a243fcf88b5ae4" +git-tree-sha1 = "9c41285c57c6e0d73a21ed4b65f6eec34805f937" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.23.6" +version = "0.23.8" [[DocStringExtensions]] deps = ["LibGit2", "Markdown", "Pkg", "Test"] @@ -317,9 +317,14 @@ version = "0.3.0" [[FFMPEG_jll]] deps = ["Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "LAME_jll", "LibVPX_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "Pkg", "Zlib_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "0fa07f43e5609ea54848b82b4bb330b250e9645b" +git-tree-sha1 = "1af4493ff9a069e26a538d6f113816b237d3cc37" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.1.0+3" +version = "4.3.1+1" + +[[FastClosures]] +git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" +uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" +version = "0.3.2" [[FileIO]] deps = ["Pkg"] @@ -332,15 +337,15 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays"] -git-tree-sha1 = "be4180bdb27a11188d694ee3773122f4921f1a62" +git-tree-sha1 = "4863cbb7910079369e258dee4add9d06ead5063a" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.8.13" +version = "0.8.14" [[FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Requires", "SparseArrays", "StaticArrays"] -git-tree-sha1 = "43b397bf66d07d113cc2cc012dd2029d336c3894" +git-tree-sha1 = "ed5d92cc9a84b9f5f9d65d3559b22d4b3b824b7e" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.5.1" +version = "2.5.2" [[FixedPointNumbers]] deps = ["Statistics"] @@ -362,15 +367,15 @@ version = "0.10.12" [[FreeType2_jll]] deps = ["Bzip2_jll", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "7d900f32a3788d4eacac2bfa3bf5c770179c8afd" +git-tree-sha1 = "158698cb8b27eccc7a0de16b73ca7912e164d88b" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.10.1+2" +version = "2.10.1+3" [[FriBidi_jll]] deps = ["Libdl", "Pkg"] -git-tree-sha1 = "2f56bee16bd0151de7b6a1eeea2ced190a2ad8d4" +git-tree-sha1 = "94e98e5597e745d9fb3094d89c7b0b754204c9dd" uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.5+3" +version = "1.0.5+4" [[FunctionWrappers]] git-tree-sha1 = "e4813d187be8c7b993cb7f85cbf2b7bfbaadc694" @@ -383,9 +388,9 @@ uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[GPUArrays]] deps = ["AbstractFFTs", "Adapt", "LinearAlgebra", "Printf", "Random", "Serialization"] -git-tree-sha1 = "0aaa4ff7001086e190a00180495b93b00df8bb43" +git-tree-sha1 = "9027d6128645d227fa9ba7d5b3aa00af696b9aaf" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "4.0.1" +version = "5.0.0" [[GPUCompiler]] deps = ["DataStructures", "InteractiveUtils", "LLVM", "Libdl", "TimerOutputs", "UUIDs"] @@ -452,9 +457,9 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[Intervals]] deps = ["Dates", "Printf", "RecipesBase", "Serialization", "TimeZones"] -git-tree-sha1 = "f8fd8065b6bccfbc2f9e7dd1fa5c0dde81d09185" +git-tree-sha1 = "9da845579d1dce4ce5118008c3fe6df17260bb46" uuid = "d8418881-c3e1-53bb-8760-2df7ec849ed5" -version = "1.4.1" +version = "1.4.2" [[InvertedIndices]] deps = ["Test"] @@ -498,9 +503,9 @@ version = "0.3.0" [[LAME_jll]] deps = ["Libdl", "Pkg"] -git-tree-sha1 = "221cc8998b9060677448cbb6375f00032554c4fd" +git-tree-sha1 = "a7999edc634307964d5651265ebf7c2e14b4ef91" uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.0+1" +version = "3.100.0+2" [[LLVM]] deps = ["CEnum", "Libdl", "Printf", "Unicode"] @@ -526,9 +531,9 @@ version = "0.4.5" [[LazyArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "MatrixFactorizations", "StaticArrays"] -git-tree-sha1 = "b8ae23618bb217f8ec300dafac8422293abc1620" +git-tree-sha1 = "e0b604d3b6da2a6e9e91c6cf928f79d2092619f3" uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "0.16.15" +version = "0.16.16" [[LeftChildRightSiblingTrees]] deps = ["AbstractTrees"] @@ -542,9 +547,9 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[LibVPX_jll]] deps = ["Libdl", "Pkg"] -git-tree-sha1 = "e3549ca9bf35feb9d9d954f4c6a9032e92f46e7c" +git-tree-sha1 = "e02378f5707d0f94af22b99e4aba798e20368f6e" uuid = "dd192d2f-8180-539f-9fb4-cc70b1dcf69a" -version = "1.8.1+1" +version = "1.9.0+0" [[Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -579,9 +584,9 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[Literate]] deps = ["Base64", "JSON", "REPL"] -git-tree-sha1 = "422133037d6dc5df9f9b97c2cb81fcd9e35ddffe" +git-tree-sha1 = "7b32a23ef47295ac3bfe66b12718e9535f466dc7" uuid = "98b081ad-f1c9-55d3-8b20-4c87d4299306" -version = "2.5.0" +version = "2.5.1" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -594,15 +599,15 @@ version = "0.4.2" [[LoopVectorization]] deps = ["DocStringExtensions", "LinearAlgebra", "OffsetArrays", "SIMDPirates", "SLEEFPirates", "UnPack", "VectorizationBase"] -git-tree-sha1 = "25b1363081880dcd6a9e27736f4b1951ea4b8933" +git-tree-sha1 = "5d1d5fb3e9a4c18ae1aa8cb16b0fbdbfeb7db5ed" uuid = "bdcacae8-1622-11e9-2a5c-532679323890" -version = "0.8.20" +version = "0.8.22" [[MPI]] deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "Pkg", "Random", "Requires", "Serialization", "Sockets"] -git-tree-sha1 = "925f4e00b51d7a68ecb88c1b60d3b7aefb8c8fcb" +git-tree-sha1 = "0bd36605eea7a4d9c3ae0d7f21c10210dd54cb83" uuid = "da04e1cc-30fd-572f-bb4f-1f8673147195" -version = "0.15.0" +version = "0.15.1" [[MPICH_jll]] deps = ["CompilerSupportLibraries_jll", "Libdl", "Pkg"] @@ -622,9 +627,9 @@ uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[MatrixFactorizations]] deps = ["ArrayLayouts", "LinearAlgebra", "Random"] -git-tree-sha1 = "9ebb16ae3c1cc772a3461741fc666c4a23e80bb1" +git-tree-sha1 = "f609fbed57eede4fd9c8529f59b3d30454f9e5ca" uuid = "a3b82374-2e81-5b9e-98ce-41277c0e4c87" -version = "0.5.1" +version = "0.5.2" [[MbedTLS]] deps = ["Dates", "MbedTLS_jll", "Random", "Sockets"] @@ -671,15 +676,15 @@ version = "0.2.2" [[NCDatasets]] deps = ["BinDeps", "CFTime", "CondaBinDeps", "DataStructures", "Dates", "Libdl", "Printf"] -git-tree-sha1 = "271e4670a6b30ec1e5daf6ba8b30240b7d85f535" +git-tree-sha1 = "25de2b6a884672b7790a0abb0b28f02f7ab78369" uuid = "85f8d34a-cbdd-5861-8df4-14fed0d494ab" -version = "0.10.2" +version = "0.10.3" [[NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] -git-tree-sha1 = "7c4e66c47848562003250f28b579c584e55becc0" +git-tree-sha1 = "ae1cbe7f1de1c443f44a5a3404140f11fe0d2610" uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" -version = "7.6.1" +version = "7.6.2" [[NLsolve]] deps = ["Distances", "LineSearches", "LinearAlgebra", "NLSolversBase", "Printf", "Reexport"] @@ -687,17 +692,11 @@ git-tree-sha1 = "ea172c86745810136d744fc67650d2e2de669c4f" uuid = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" version = "4.4.0" -[[NNPACK_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "c3d1a616362645754b18e12dbba96ec311b0867f" -uuid = "a6bfbf70-4841-5cb9-aa18-3a8ad3c413ee" -version = "2018.6.22+0" - [[NNlib]] -deps = ["Libdl", "LinearAlgebra", "LoopVectorization", "NNPACK_jll", "Pkg", "Requires", "Statistics"] -git-tree-sha1 = "1d8128735fdf3ab1643dd8bc9499e4b34ccb718d" +deps = ["Libdl", "LinearAlgebra", "Pkg", "Requires", "Statistics"] +git-tree-sha1 = "8ec4693a5422f0b064ce324f59351f24aa474893" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.7.3" +version = "0.7.4" [[NaNMath]] git-tree-sha1 = "c84c576296d0e2fbb3fc134d3e09086b3ea617cd" @@ -711,9 +710,9 @@ version = "1.1.2" [[Ogg_jll]] deps = ["Libdl", "Pkg"] -git-tree-sha1 = "59cf7a95bf5ac39feac80b796e0f39f9d69dc887" +git-tree-sha1 = "4c3275cda1ba99d1244d0b82a9d0ca871c3cf66b" uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.4+0" +version = "1.3.4+1" [[OpenMPI_jll]] deps = ["Libdl", "Pkg"] @@ -723,9 +722,9 @@ version = "4.0.2+2" [[OpenSSL_jll]] deps = ["Libdl", "Pkg"] -git-tree-sha1 = "7aaaded15bf393b5f34c2aad5b765c18d26cb495" +git-tree-sha1 = "997359379418d233767f926ea0c43f0e731735c0" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.1+4" +version = "1.1.1+5" [[OpenSpecFun_jll]] deps = ["CompilerSupportLibraries_jll", "Libdl", "Pkg"] @@ -735,9 +734,9 @@ version = "0.5.3+3" [[Opus_jll]] deps = ["Libdl", "Pkg"] -git-tree-sha1 = "002c18f222a542907e16c83c64a1338992da7e2c" +git-tree-sha1 = "cc90a125aa70dbb069adbda2b913b02cf2c5f6fe" uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.1+1" +version = "1.3.1+2" [[OrderedCollections]] git-tree-sha1 = "293b70ac1780f9584c89268a6e2a560d938a7065" @@ -745,10 +744,10 @@ uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.3.0" [[OrdinaryDiffEq]] -deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "ExponentialUtilities", "FiniteDiff", "ForwardDiff", "GenericSVD", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "NLsolve", "RecursiveArrayTools", "Reexport", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] -git-tree-sha1 = "b3e9e9a0bdd8e0ac3703e8c4be3cb504d1ebd312" +deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "ExponentialUtilities", "FastClosures", "FiniteDiff", "ForwardDiff", "GenericSVD", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "NLsolve", "RecursiveArrayTools", "Reexport", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] +git-tree-sha1 = "4a804dd0678fd9dda073faae523fd2d07179b56c" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "5.42.0" +version = "5.42.1" [[PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse", "Test"] @@ -770,9 +769,9 @@ version = "0.12.1" [[Parsers]] deps = ["Dates", "Test"] -git-tree-sha1 = "10134f2ee0b1978ae7752c41306e131a684e1f06" +git-tree-sha1 = "8077624b3c450b15c087944363606a6ba12f925e" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "1.0.7" +version = "1.0.10" [[Pkg]] deps = ["Dates", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "UUIDs"] @@ -792,9 +791,9 @@ version = "1.0.5" [[Plots]] deps = ["Base64", "Contour", "Dates", "FFMPEG", "FixedPointNumbers", "GR", "GeometryBasics", "GeometryTypes", "JSON", "LinearAlgebra", "Measures", "NaNMath", "PlotThemes", "PlotUtils", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "Requires", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs"] -git-tree-sha1 = "f80ce6a2c0342b658d752d1396fad34142df6a05" +git-tree-sha1 = "0ca3e823caba835d5283fc9112266a4f20f3f713" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.5.7" +version = "1.5.8" [[Polynomials]] deps = ["Intervals", "LinearAlgebra", "RecipesBase"] @@ -899,18 +898,18 @@ version = "0.2.0" [[Roots]] deps = ["Printf"] -git-tree-sha1 = "069e68c2173b4e4d0c37ffb3268d37f168ad719c" +git-tree-sha1 = "1211c7c1928c1ed29cdcef65979b7a791e3b9fbe" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "1.0.4" +version = "1.0.5" [[SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SIMDPirates]] deps = ["VectorizationBase"] -git-tree-sha1 = "19880eef12759d7d049516fcb11f1ed8440963d6" +git-tree-sha1 = "884df77ee290b45bcf9d2edcdb186afaf1281c39" uuid = "21efa798-c60a-11e8-04d3-e1a92915a26a" -version = "0.8.21" +version = "0.8.23" [[SLEEFPirates]] deps = ["Libdl", "SIMDPirates", "VectorizationBase"] @@ -1035,9 +1034,9 @@ version = "1.0.1" [[TimeZones]] deps = ["Dates", "EzXML", "Mocking", "Pkg", "Printf", "RecipesBase", "Serialization", "Unicode"] -git-tree-sha1 = "1038a97206e7696ba106f2c2dafa2e9cca393269" +git-tree-sha1 = "338ddbb2b9b50a9a423ba6c3fad1824553535988" uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53" -version = "1.3.1" +version = "1.3.2" [[TimerOutputs]] deps = ["Printf"] @@ -1077,9 +1076,9 @@ uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" [[VectorizationBase]] deps = ["CpuId", "Libdl", "LinearAlgebra"] -git-tree-sha1 = "46afc4dc02f534e149149173f38f8f59cc23c165" +git-tree-sha1 = "09a4d4896aac75199b332eb26a8d0a9e4655e34a" uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" -version = "0.12.29" +version = "0.12.30" [[VersionParsing]] git-tree-sha1 = "80229be1f670524750d905f8fc8148e5a8c4537f" @@ -1094,9 +1093,9 @@ version = "0.1.2" [[WriteVTK]] deps = ["Base64", "CodecZlib", "FillArrays", "LightXML", "Random", "TranscodingStreams"] -git-tree-sha1 = "deb18aae386ed5a973bbf2e4e10a990caed9a531" +git-tree-sha1 = "1bce1d59eacda27e6a2ae7839b880dde579ad8cc" uuid = "64499a7a-5c06-52f2-abe2-ccb03c286192" -version = "1.7.2" +version = "1.7.3" [[XML2_jll]] deps = ["Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"] @@ -1106,9 +1105,9 @@ version = "2.9.10+1" [[Zlib_jll]] deps = ["Libdl", "Pkg"] -git-tree-sha1 = "622d8b6dc0c7e8029f17127703de9819134d1b71" +git-tree-sha1 = "d5bba6485811931e4b8958e2d7ca3738273ac468" uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.11+14" +version = "1.2.11+15" [[ZygoteRules]] deps = ["MacroTools"] @@ -1118,30 +1117,30 @@ version = "0.2.0" [[libass_jll]] deps = ["Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "027a304b2a90de84f690949a21f94e5ae0f92c73" +git-tree-sha1 = "f02d0db58888592e98c5f4953cef620ce9274eee" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.14.0+2" +version = "0.14.0+3" [[libfdk_aac_jll]] deps = ["Libdl", "Pkg"] -git-tree-sha1 = "480c7ed04f68ea3edd4c757f5db5b6a0a4e0bd99" +git-tree-sha1 = "e17b4513993b4413d31cffd1b36a63625ebbc3d3" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "0.1.6+2" +version = "0.1.6+3" [[libvorbis_jll]] deps = ["Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "6a66f65b5275dfa799036c8a3a26616a0a271c4a" +git-tree-sha1 = "8014e1c1033009edcfe820ec25877a9f1862ba4c" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.6+4" +version = "1.3.6+5" [[x264_jll]] deps = ["Libdl", "Pkg"] -git-tree-sha1 = "d89346fe63a6465a9f44e958ac0e3d366af90b74" +git-tree-sha1 = "e496625b900df1b02ab0e02fad316b77446616ef" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2019.5.25+2" +version = "2020.7.14+1" [[x265_jll]] deps = ["Libdl", "Pkg"] -git-tree-sha1 = "61324ad346b00a6e541896b94201c9426591e43a" +git-tree-sha1 = "ac7d44fa1639a780d0ae79ca1a5a7f4181131825" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.0.0+1" +version = "3.0.0+2"