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Updated Substitution Models (markdown)
Modified EAL and ELM matrix descriptions
Added ELM and EAL matrix from the GTRpmix model
update citations for reversible Q matrix
fix NQ matrix entries
add citation for strand symmetric model
add FLAVI and re-order protein matrices in alphabet
fix Q.plant appear 2x and add Q.insect, thanks Lars
add new Q matrices
remove strange first code
Revising AliSim user manual
Adding simulating multi-genes alignment Fixing grammar mistakes
Update AliSim homepage and minor changes in Substitution-Models
Adding continuous Gamma model
Adding AliSim Wiki, updating how to use AliSim with standard/complex models
Fix DNA model code example (thanks Joel Mercado)
Partially update doc version 2
reference 'Zharkikh, 1994' corrected (kh was swapped)
typos corrected and a note added
change dx.doi.org to doi.org
update doc for 1.6
update custom codon model
change citation for UFBoot
Heiko's suggestion on model descriptions
HIVw and HIVb ref update
update Lie Markov and Xeon Phi doc
reformat