Use of best models returned by IQTREE in MrBayes

[Rohit-Rannavre]

Hello guys, I would like to know how I can use the best models for each of the partitions returned by IQ-TREE in nexus format with MrBayes.

Here is the command I fired:

iqtree2.exe -s DatasetAligned.phy -p partitions.nex -T AUTO -merit BIC -m TESTONLY -mset mrbayes

Here is the best scheme I'm getting:

#nexus
begin sets;
charset p1 = 1-1696\3;
charset p2 = 2-1696\3;
charset p3 = 3-1696\3;
charpartition mymodels =
SYM+G4: p1,
HKY+F+G4: p2,
K2P: p3;
end;

[bqminh]

There were some discussions about how to generate mrbayes block, pls check it here: #191. There will be soon a feature to export mrbayes nexus file directly from ModelFinder.