resuming a partially completed run

[Echodonut]

Hi again,

I have run into another issue with running my trees. I have been using the webUI, and I am increasing the number of bootstraps, and the numstop value, which is is leading to the program running longer than 24 hours and getting stopped. I want to continue running the files, as per the guidelines suggested with the error (http://www.iqtree.org/doc/Command-Reference#checkpointing-to-resume-stopped-run).

If I understand correctly, this is only possible with the locally installed version of IQTREE2. I have downloaded, unpacked and tried to run the programme, but I keep getting the same error (Windows 10):
my command:
C:\Bioinformatics\iqtree-2.4.0-Windows\iqtree-2.4.0-Windows>bin\iqtree -s example.phy
The error:
'bin\iqtree' is not recognized as an internal or external command,
operable program or batch file.

I have tried running it directly from the bin folder: doesn't work. I have tried adding the bin folder to my Windows Path, but that doesn't make a difference either.

Could anyone help me figure out how to get iqtree to work on my local machine? If I can get that far, I can either try to continue the runs I have partially done, or just restart the runs.

[bqminh]

The binary is named iqtree2, not iqtree.

So your command line can be:

bin\iqtree2 -s example.phy

[Echodonut]

well.... that's what I get for copy-pasting over tutorial commands! Sorry for wasting your time, that was not my brightest moment...

[Echodonut]

I have been finishing my analyses on my desktop, they get there. Don't even need a big supercomputer or server or anything :)