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Web Server Tutorial
jtrifinopoulos edited this page Jan 12, 2016
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This tutorial gives users a quick starting guide for the IQ-TREE Web Server.
Table of Contents
This tutorial explains briefly how to use the IQ-TREE web server for fast online phylogenetic inference, accessible at iqtree.cibiv.univie.ac.at.
Copyright (c) 2010-2016 IQ-TREE development team.
- First example
- Model selection
- New model selection
- Codon models
- Binary, Morphological, SNPs
- Ultrafast bootstrap
- Nonparametric bootstrap
- Single branch tests
- Partitioned analysis
- Partitioning with mixed data
- Partition scheme selection
- Bootstrapping partition model
- Utilizing multi-core CPUs
- Tree topology tests
- User-defined models
- Consensus construction and bootstrap value assignment
- Computing Robinson-Foulds distance
- Generating random trees
- DNA models
- Protein models
- Codon models
- Binary, morphological models
- Ascertainment bias correction
- Rate heterogeneity
- Counts files
- First running example
- Substitution models
- Virtual population size
- Sampling method
- Bootstrap branch support
- Interpretation of branch lengths