[pre-commit.ci] auto fixes from pre-commit.com hooks

pre-commit-ci[bot] · pre-commit-ci[bot] · commit 0ce990cb165a · 2024-01-15T18:11:20.000Z
for more information, see https://pre-commit.ci
diff --git a/_preprocessing/prepare_input_datasets.py b/_preprocessing/prepare_input_datasets.py
@@ -5,7 +5,7 @@
 #       extension: .py
 #       format_name: percent
 #       format_version: '1.3'
-#       jupytext_version: 1.15.0
+#       jupytext_version: 1.16.1
 #   kernelspec:
 #     display_name: Python [conda env:conda-2023-atlas-protocol]
 #     language: python
diff --git a/_preprocessing/subsample_luca.py b/_preprocessing/subsample_luca.py
@@ -5,7 +5,7 @@
 #       extension: .py
 #       format_name: percent
 #       format_version: '1.3'
-#       jupytext_version: 1.15.0
+#       jupytext_version: 1.16.1
 #   kernelspec:
 #     display_name: Python [conda env:.conda-pircher-sc-integrate2]
 #     language: python
diff --git a/docs/notebooks/01_merge.py b/docs/notebooks/01_merge.py
@@ -5,7 +5,7 @@
 #       extension: .py
 #       format_name: percent
 #       format_version: '1.3'
-#       jupytext_version: 1.15.0
+#       jupytext_version: 1.16.1
 # ---
 
 # %% [markdown]
diff --git a/docs/notebooks/02_qc.py b/docs/notebooks/02_qc.py
@@ -5,7 +5,7 @@
 #       extension: .py
 #       format_name: percent
 #       format_version: '1.3'
-#       jupytext_version: 1.15.0
+#       jupytext_version: 1.16.1
 #   kernelspec:
 #     display_name: Python [conda env:conda-2023-atlas-protocol]
 #     language: python
diff --git a/docs/notebooks/03_seed_annotation.py b/docs/notebooks/03_seed_annotation.py
@@ -5,7 +5,7 @@
 #       extension: .py
 #       format_name: percent
 #       format_version: '1.3'
-#       jupytext_version: 1.15.0
+#       jupytext_version: 1.16.1
 #   kernelspec:
 #     display_name: Python [conda env:conda-2023-atlas-protocol]
 #     language: python
diff --git a/docs/notebooks/04_integrate_scvi.py b/docs/notebooks/04_integrate_scvi.py
@@ -5,7 +5,7 @@
 #       extension: .py
 #       format_name: percent
 #       format_version: '1.3'
-#       jupytext_version: 1.15.0
+#       jupytext_version: 1.16.1
 # ---
 
 # %% [markdown]
diff --git a/docs/notebooks/05_cell_type_annotation.py b/docs/notebooks/05_cell_type_annotation.py
@@ -5,7 +5,7 @@
 #       extension: .py
 #       format_name: percent
 #       format_version: '1.3'
-#       jupytext_version: 1.15.0
+#       jupytext_version: 1.16.1
 #   kernelspec:
 #     display_name: Python [conda env:conda-2023-atlas-protocol]
 #     language: python
diff --git a/docs/notebooks/06_differential_expression.py b/docs/notebooks/06_differential_expression.py
@@ -5,7 +5,7 @@
 #       extension: .py
 #       format_name: percent
 #       format_version: '1.3'
-#       jupytext_version: 1.15.0
+#       jupytext_version: 1.16.1
 #   kernelspec:
 #     display_name: Python [conda env:conda-2023-atlas-protocol]
 #     language: python
diff --git a/docs/notebooks/09_compositional.py b/docs/notebooks/09_compositional.py
@@ -5,7 +5,7 @@
 #       extension: .py
 #       format_name: percent
 #       format_version: '1.3'
-#       jupytext_version: 1.15.0
+#       jupytext_version: 1.16.1
 #   kernelspec:
 #     display_name: Python [conda env:conda-2023-atlas-protocol]
 #     language: python
diff --git a/docs/notebooks/10_bulk_integration.py b/docs/notebooks/10_bulk_integration.py
@@ -5,7 +5,7 @@
 #       extension: .py
 #       format_name: percent
 #       format_version: '1.3'
-#       jupytext_version: 1.15.0
+#       jupytext_version: 1.16.1
 #   kernelspec:
 #     display_name: Python [conda env:conda-2023-atlas-protocol]
 #     language: python
diff --git a/docs/notebooks/10_functional_analysis.py b/docs/notebooks/10_functional_analysis.py
@@ -5,7 +5,7 @@
 #       extension: .py
 #       format_name: percent
 #       format_version: '1.3'
-#       jupytext_version: 1.15.0
+#       jupytext_version: 1.16.1
 #   kernelspec:
 #     display_name: 'SSH apollo-15 apollo-15: mmCD45'
 #     language: ''
diff --git a/docs/notebooks/15_cell_cell_communication.py b/docs/notebooks/15_cell_cell_communication.py
@@ -5,7 +5,7 @@
 #       extension: .py
 #       format_name: percent
 #       format_version: '1.3'
-#       jupytext_version: 1.15.0
+#       jupytext_version: 1.16.1
 #   kernelspec:
 #     display_name: atlas_protocol
 #     language: python
