index.Rmd

---
title: "Neuroconductor"
date: '`r Sys.Date()`'
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# Guides for Developers {#devguides}

1. [Preparing Your Package for Submission](getting_ready_for_submission/index.html)
2. [Changes to your Package](continuous_integration/index.html)

# Frequently Asked Questions (FAQ)

Please visit the [FAQ](faq/index.html) for information on how to begin.

# Installation Guides {#install}

1. [Using the Windows Subsystem for Linux](windows_wsl/index.html)
2. [Installing devtools](installing_devtools/index.html)
3. [Installing ANTsR](installing_ANTsR/index.html)

# Required/General Readings {#req}

1. [NIfTI Basics](nifti_basics/index.html)
2. [Viewing Data: Linked Viewers](linked_viewers/index.html)
2. [Resampling Images](resample_image/index.html)

# Data
1. [Downloading Human Connectome Project Data](neurohcp/index.html)
1. [Downloading Functional Connectomes Projects](fcp_indi/index.html)

# General Tutorials {#tutorials}

## Structural Imaging

1. [Brain Extraction](brain_extraction/index.html)
2. [Brain Extraction for CT](ss_ct/index.html)
3. [Tissue-Class Segmentation](tissue_class_segmentation/index.html)
4. [Labeling Brain Structures](label_image/index.html)
5. [Processing Within-Visit Structural MRI](preprocess_mri_within/index.html)
2. [Hemorrhagic Stroke Segmentation in CT](ct_ich_seg/index.html)
6. [Cortical Thickness Estimation (NOT DONE)](cortical_thickness/index.html)

## fMRI 

4. [Resting-State fMRI analysis using ANTsR](fmri_analysis_ANTsR/index.html)
5. [Resting-State fMRI analysis using fslr](fmri_analysis_fslr/index.html)
5. [Resting-State fMRI analysis using spm12r](fmri_analysis_spm12r/index.html)

## DTI
7. [DTI analysis with fslr](DTI_analysis_fslr/index.html)
8. [DTI analysis with Camino](DTI_analysis_rcamino/index.html)
8. [DTI analysis with Camino with HCP data](DTI_analysis_rcamino_hcp/index.html)

# Disease-specific Tutorials

1. [Multiple Sclerosis Lesion Segmentation](ms_lesion/index.html)