MD Simulation with "colored" patchy particles #2032
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BiagioValenti
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Provided there aren't THAT many different colors of patches, you can assign a different type to each color, then set the pair interaction parameters between colors according to your model. For example, you can set |
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Hi!
I'm trying to implement a code to do a Molecular Dynamics simulation of patchy particles where the patches are "colored". This means that for every type of particle, each patch has an individual number (through the defining orientation vector) and can interact only with certain other patches with certain numbers following then an interaction matrix.
For example, If I have particle A with patches 1,2,3 and particle B with patches 4,5,6 I might for example say that the only allowed interactions are 1-1, 2-4, 3-5 and 6-6.
How can I implement this in HOOMD?
Thank you to everyone who can help me
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