From 1a6adddacbd13ec3d17b019a454aae15dfa637ef Mon Sep 17 00:00:00 2001
From: Vignan Thumma <126392049+vignan8@users.noreply.github.com>
Date: Sat, 25 Mar 2023 12:10:34 +0530
Subject: [PATCH] Update opt.py

---
 opt.py | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/opt.py b/opt.py
index c909e4d..42b8046 100755
--- a/opt.py
+++ b/opt.py
@@ -3,10 +3,14 @@
 from vaccine.load import dat as vaccine
 from corona import corona
 
+# Replace thymine (T) with uracil (U) in virus sequence
 virus = virus.replace("T", "U")
+
+# Replace pseudouridine (Ψ) with uracil (U) in vaccine sequence
 vaccine = vaccine.replace("Ψ", "U")
 
 """
+# Find the start position of the vaccine sequence in the virus sequence
 for i in range(len(virus)-len(vaccine)):
   mm = virus[i:i+len(vaccine)]
   mr = sum([c1 == c2 for c1,c2 in zip(mm, vaccine)]) / len(vaccine)