JGA xsd 1.3.0

JGA xsd 1.3.0

Author: komstat

JGA_metadata.xlsx

@@ -3,8 +3,8 @@
 ## 日本語
 
 * 生命情報・DDBJ センター
-* 公開日: 2025-06-23
-* version: v3.5
+* 公開日: 2025-10-23
+* version: v3.6
 
 [Bioinformation and DDBJ Center](https://www.ddbj.nig.ac.jp/index-e.html) のデータベースに登録するためのメタデータ XML を生成、チェックするツール。
 * [DDBJ Sequence Read Archive (DRA)](https://www.ddbj.nig.ac.jp/dra/submission.html): Submission、Experiment、Run と Analysis (任意) XML を生成・チェックするためのエクセルとスクリプト
@@ -13,6 +13,7 @@
 
 ## 履歴
 
+* 2025-10-23: v3.6 JGA xsd 1.3.0
 * 2025-06-23: v3.5 Non-ASCII, DRA Experiment Library Layout
 * 2025-05-19: v3.4 5000 以上のオブジェクト数でワーニング
 * 2025-02-27: v3.3 Organization bug fix
@@ -332,8 +333,8 @@ TBD
 ## English
 
 * Bioinformation and DDBJ Center
-* release: 2025-06-23
-* version: v3.5
+* release: 2025-10-23
+* version: v3.6
 
 These files are Excel, container images and tools for generation and validation of metadata XML files for databases of [Bioinformation and DDBJ Center](https://www.ddbj.nig.ac.jp/index-e.html).
 * [DDBJ Sequence Read Archive (DRA)](https://www.ddbj.nig.ac.jp/dra/submission-e.html): generate and check Submission, Experiment and Run XML files.
@@ -342,6 +343,7 @@ These files are Excel, container images and tools for generation and validation
 
 ## History
 
+* 2025-10-23: v3.6 JGA xsd 1.3.0
 * 2025-06-23: v3.5 Non-ASCII, DRA Experiment Library Layout
 * 2025-05-19: v3.4 Warning to objects > 5000
 * 2025-02-27: v3.3 Organization bug fix

README.md

@@ -1270,7 +1270,12 @@ experiment_f.puts xml_experiment.EXPERIMENT_SET{|experiment_set|
                 platform_e.INSTRUMENT_MODEL(exp[7])
               }
 
-            when /illumina|NextSeq|HiSeq/i
+            when /illumina|nextseq|hiseq/i
+              seq2_platform.ILLUMINA{|platform_e|
+                platform_e.INSTRUMENT_MODEL(exp[7])
+              }
+
+            when "unspecified"
               seq2_platform.ILLUMINA{|platform_e|
                 platform_e.INSTRUMENT_MODEL(exp[7])
               }
@@ -1280,12 +1285,27 @@ experiment_f.puts xml_experiment.EXPERIMENT_SET{|experiment_set|
                 platform_e.INSTRUMENT_MODEL(exp[7])
               }
 
+            when /AB 5500/
+              seq2_platform.ABI_SOLID{|platform_e|
+                platform_e.INSTRUMENT_MODEL(exp[7])
+              }
+
             when /Ion/
               seq2_platform.ION_TORRENT{|platform_e|
                 platform_e.INSTRUMENT_MODEL(exp[7])
               }
 
-            when /pacbio|sequel/i
+            when /pacbio/i
+              seq2_platform.PACBIO_SMRT{|platform_e|
+                platform_e.INSTRUMENT_MODEL(exp[7])
+              }
+
+            when /Sequel/
+              seq2_platform.PACBIO_SMRT{|platform_e|
+                platform_e.INSTRUMENT_MODEL(exp[7])
+              }
+
+            when "Onso", "Revio"
               seq2_platform.PACBIO_SMRT{|platform_e|
                 platform_e.INSTRUMENT_MODEL(exp[7])
               }
@@ -1295,12 +1315,61 @@ experiment_f.puts xml_experiment.EXPERIMENT_SET{|experiment_set|
                 platform_e.INSTRUMENT_MODEL(exp[7])
               }
 
-            when /bgiseq|dnbseq|mgiseq/i
+            when /AB 3/
+                seq2_platform.CAPILLARY{|platform_e|
+                  platform_e.INSTRUMENT_MODEL(exp[7])
+                }
+            when /Helicos HeliScope/
+              seq2_platform.HELICOS{|platform_e|
+                platform_e.INSTRUMENT_MODEL(exp[7])
+              }
+
+            when /Complete/
+              seq2_platform.COMPLETE_GENOMICS{|platform_e|
+                platform_e.INSTRUMENT_MODEL(exp[7])
+              }
+
+            when /bgiseq|mgiseq/i
               seq2_platform.BGISEQ{|platform_e|
                 platform_e.INSTRUMENT_MODEL(exp[7])
               }
 
-            end
+            when /dnbseq/i
+              seq2_platform.DNBSEQ{|platform_e|
+                platform_e.INSTRUMENT_MODEL(exp[7])
+              }
+
+            when /Element/
+              seq2_platform.ELEMENT{|platform_e|
+                platform_e.INSTRUMENT_MODEL(exp[7])
+              }
+
+            when "UG 100"
+              seq2_platform.ULTIMA{|platform_e|
+                platform_e.INSTRUMENT_MODEL(exp[7])
+              }
+
+            when "GENIUS", "Genapsys Sequencer", "GS111"
+              seq2_platform.GENAPSYS{|platform_e|
+                platform_e.INSTRUMENT_MODEL(exp[7])
+              }
+
+            when "GenoCare 1600", "GenoLab M", "FASTASeq 300"
+              seq2_platform.GENEMIND{|platform_e|
+                platform_e.INSTRUMENT_MODEL(exp[7])
+              }
+
+            when "Tapestri"
+              seq2_platform.TAPESTRI{|platform_e|
+                platform_e.INSTRUMENT_MODEL(exp[7])
+              }
+
+            when "Sentosa SQ301"
+              seq2_platform.VELA_DIAGNOSTICS{|platform_e|
+                platform_e.INSTRUMENT_MODEL(exp[7])
+              }
+
+						end
 
             } #seq2_platform