Add Basic CI to the project (#3)

Author: AdityaPandeyCN

.github/workflows/ci.yml

@@ -0,0 +1,51 @@
+name: CI
+
+on:
+  push:
+    branches: [main, develop]
+  pull_request:
+    branches: [main, develop]
+
+jobs:
+  build-and-test:
+    name: Build and Test
+    runs-on: ubuntu-24.04  
+    
+    steps:
+    - uses: actions/checkout@v5  
+    
+    - name: Install ROOT
+      run: |
+        ROOT_URL="https://root.cern/download/root_v6.34.06.Linux-ubuntu24.04-x86_64-gcc13.3.tar.gz"
+        wget -O root.tar.gz $ROOT_URL
+        tar -xzf root.tar.gz -C /opt/  
+        echo "/opt/root/bin" >> $GITHUB_PATH
+        
+    - name: Install build dependencies
+      run: |
+        sudo apt-get update
+        sudo apt-get install -y libvdt-dev libtbb-dev
+    
+    - name: Configure CMake
+      run: |
+        source thisroot.sh
+        mkdir build  
+        cd build
+        cmake .. \
+          -DCMAKE_BUILD_TYPE=Release \
+          -DRAMTOOLS_BUILD_TESTS=ON \
+          -DRAMTOOLS_BUILD_TOOLS=ON \
+          -DRAMTOOLS_BUILD_BENCHMARKS=OFF
+    
+    - name: Build
+      run: |
+        source thisroot.sh
+        cd build
+        cmake --build . --config Release -j $(nproc)
+    
+    - name: Run tests
+      run: |
+        source thisroot.sh
+        cd build
+        ctest --output-on-failure --build-config Release
+

.gitignore

@@ -16,7 +16,6 @@ tmp/
 *.fq
 *.bk
 *.rootix
-*.sam
 build/
 cmake-build-*/
 Build/
@@ -25,4 +24,5 @@ Testing/
 .vscode/
 docs/html/
 docs/latex/
-html/
+html/
+

src/ramcore/SamToNTuple.cxx

@@ -29,7 +29,7 @@ void samtoramntuple(const char *datafile,
 
     auto model = RAMNTupleRecord::MakeModel();
 
-    ROOT::RNTupleWriteOptions writeOptions;
+    ROOT::Experimental::RNTupleWriteOptions writeOptions;
     writeOptions.SetCompression(compression_algorithm);
     writeOptions.SetMaxUnzippedPageSize(64000);
 

src/rntuple/RAMNTupleRecord.cxx

@@ -199,7 +199,7 @@ void RAMNTupleRecord::WriteAllRefs(TFile &file)
    auto rnameField = metaModel->MakeField<std::vector<std::string>>("rname_refs");
    auto rnextField = metaModel->MakeField<std::vector<std::string>>("rnext_refs");
 
-   ROOT::RNTupleWriteOptions writeOptions;
+   RNTupleWriteOptions writeOptions;
    writeOptions.SetCompression(505);
 
    auto metaWriter = RNTupleWriter::Append(std::move(metaModel), "METADATA", file, writeOptions);
@@ -256,7 +256,7 @@ void RAMNTupleRecord::WriteIndex(TFile &file)
    auto indexModel = RNTupleModel::Create();
    auto indexField = indexModel->MakeField<std::vector<RAMNTupleIndex::IndexEntry>>("index_entries");
 
-   ROOT::RNTupleWriteOptions writeOptions;
+   RNTupleWriteOptions writeOptions;
    writeOptions.SetCompression(505);
 
    auto indexWriter = RNTupleWriter::Append(std::move(indexModel), "INDEX", file, writeOptions);
@@ -530,7 +530,7 @@ void RAMNTupleConverter::ConvertSAMToRAMNTuple(const std::string &sam_file, cons
 
    auto model = RAMNTupleRecord::MakeModel();
 
-   ROOT::RNTupleWriteOptions writeOptions;
+   RNTupleWriteOptions writeOptions;
    writeOptions.SetCompression(505); // ZSTD level 5
 
    auto writer = RNTupleWriter::Append(std::move(model), "RAM", *file, writeOptions);