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Today I have tried to use the webgestaltpy 0.3.1 for GSEA, and I was surprised to see that the reported FDR values exceed 1. What is going on there, is his expected? Should I do the adjustment myself?
From Google Group Post (https://groups.google.com/g/webgestalt/c/fynNrb4RMlQ):
Hi!
Today I have tried to use the webgestaltpy 0.3.1 for GSEA, and I was surprised to see that the reported FDR values exceed 1. What is going on there, is his expected? Should I do the adjustment myself?
I checked the github, and even in the script comments(https://github.com/bzhanglab/webgestaltpy/blob/master/src/lib.rs) example the FDR exceeds 1. I paste the script comment example below:
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