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1 | 1 | from v03_pipeline.lib.tasks.clickhouse_migration.migrate_all_projects_to_clickhouse import (
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2 | 2 | MigrateAllProjectsToClickHouseTask,
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3 | 3 | )
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4 |
| -from v03_pipeline.lib.tasks.delete_family_table import DeleteFamilyTableTask |
5 |
| -from v03_pipeline.lib.tasks.delete_family_tables import DeleteFamilyTablesTask |
6 |
| -from v03_pipeline.lib.tasks.delete_project_family_tables import ( |
7 |
| - DeleteProjectFamilyTablesTask, |
8 |
| -) |
9 |
| -from v03_pipeline.lib.tasks.delete_project_tables import DeleteProjectTablesTask |
10 |
| -from v03_pipeline.lib.tasks.migrate_all_lookup_tables import MigrateAllLookupTablesTask |
11 |
| -from v03_pipeline.lib.tasks.migrate_all_variant_annotations_tables import ( |
12 |
| - MigrateAllVariantAnnotationsTablesTask, |
13 |
| -) |
14 | 4 | from v03_pipeline.lib.tasks.reference_data.update_variant_annotations_table_with_updated_reference_dataset import (
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15 | 5 | UpdateVariantAnnotationsTableWithUpdatedReferenceDataset,
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16 | 6 | )
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17 | 7 | from v03_pipeline.lib.tasks.run_pipeline import RunPipelineTask
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18 | 8 | from v03_pipeline.lib.tasks.update_lookup_table import (
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19 | 9 | UpdateLookupTableTask,
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20 | 10 | )
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21 |
| -from v03_pipeline.lib.tasks.update_lookup_table_with_deleted_families import ( |
22 |
| - UpdateLookupTableWithDeletedFamiliesTask, |
23 |
| -) |
24 |
| -from v03_pipeline.lib.tasks.update_lookup_table_with_deleted_project import ( |
25 |
| - UpdateLookupTableWithDeletedProjectTask, |
26 |
| -) |
27 | 11 | from v03_pipeline.lib.tasks.update_project_table import UpdateProjectTableTask
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28 |
| -from v03_pipeline.lib.tasks.update_project_tables_with_deleted_families import ( |
29 |
| - UpdateProjectTablesWithDeletedFamiliesTask, |
30 |
| -) |
31 |
| -from v03_pipeline.lib.tasks.update_variant_annotations_table_with_deleted_families import ( |
32 |
| - UpdateVariantAnnotationsTableWithDeletedFamiliesTask, |
33 |
| -) |
34 |
| -from v03_pipeline.lib.tasks.update_variant_annotations_table_with_deleted_project import ( |
35 |
| - UpdateVariantAnnotationsTableWithDeletedProjectTask, |
36 |
| -) |
37 | 12 | from v03_pipeline.lib.tasks.update_variant_annotations_table_with_new_samples import (
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38 | 13 | UpdateVariantAnnotationsTableWithNewSamplesTask,
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39 | 14 | )
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44 | 19 | from v03_pipeline.lib.tasks.write_success_file import WriteSuccessFileTask
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45 | 20 |
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46 | 21 | __all__ = [
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47 |
| - 'DeleteFamilyTableTask', |
48 |
| - 'DeleteFamilyTablesTask', |
49 |
| - 'DeleteProjectFamilyTablesTask', |
50 |
| - 'DeleteProjectTablesTask', |
51 |
| - 'MigrateAllLookupTablesTask', |
52 | 22 | 'MigrateAllProjectsToClickHouseTask',
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53 |
| - 'MigrateAllVariantAnnotationsTablesTask', |
54 | 23 | 'RunPipelineTask',
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55 | 24 | 'UpdateLookupTableTask',
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56 |
| - 'UpdateLookupTableWithDeletedFamiliesTask', |
57 |
| - 'UpdateLookupTableWithDeletedProjectTask', |
58 | 25 | 'UpdateProjectTableTask',
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59 |
| - 'UpdateProjectTablesWithDeletedFamiliesTask', |
60 |
| - 'UpdateVariantAnnotationsTableWithDeletedFamiliesTask', |
61 |
| - 'UpdateVariantAnnotationsTableWithDeletedProjectTask', |
62 | 26 | 'UpdateVariantAnnotationsTableWithNewSamplesTask',
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63 | 27 | 'UpdateVariantAnnotationsTableWithUpdatedReferenceDataset',
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64 | 28 | 'WriteMetadataForRunTask',
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